Alternatives and similar repositories for course

Users that are interested in course are comparing it to the libraries listed below

• mwang87 / q2_metabolomics
  ☆11Updated 6 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆57Updated 3 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated 2 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 2 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆66Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• EvaYiwenWang / PLSDAbatch_workflow
  ☆18Updated 2 years ago
• Shenhav-and-Korem-labs / SCRuB
  ☆32Updated last year
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 4 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆36Updated 3 years ago
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆89Updated 4 months ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆66Updated 7 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆57Updated last month
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆95Updated 3 months ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆22Updated 6 years ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆58Updated last year
• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆15Updated 2 years ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 3 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆83Updated 2 weeks ago
• SegataLab / metamlst
  MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
  ☆16Updated 2 years ago
• gamcil / clustermap.js
  ☆31Updated 4 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆33Updated 2 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 7 years ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆64Updated last year
• evolbioinfo / booster
  ☆28Updated 5 years ago