glarue / jgi-query
A simple command-line tool to download data from Joint Genome Institute databases
☆50Updated 2 years ago
Alternatives and similar repositories for jgi-query:
Users that are interested in jgi-query are comparing it to the libraries listed below
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆35Updated 6 months ago
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- An R package designed for drawing gene arrow maps☆70Updated last month
- ☆27Updated 2 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 7 months ago
- ☆68Updated 2 weeks ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- Bioinformatics tool for Locus Visualisation☆91Updated last week
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆83Updated 2 years ago
- Fast and flexible ORF finder☆69Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆46Updated last month
- ☆125Updated 6 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- gutSMASH☆53Updated 3 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- MGnify genome analysis pipeline☆105Updated this week
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆49Updated 3 months ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- A toolkit for prokaryotic comparative genomics☆46Updated 2 months ago
- CLI tool to annotate genes with KOfam☆77Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆59Updated 3 months ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated 2 months ago
- DDBJ Fast Annotation and Submission Tool☆79Updated 3 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Find clustered hits from a BLAST search☆112Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago