glarue / jgi-queryLinks
A simple command-line tool to download data from Joint Genome Institute databases
☆52Updated 2 years ago
Alternatives and similar repositories for jgi-query
Users that are interested in jgi-query are comparing it to the libraries listed below
Sorting:
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- ☆131Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆64Updated last month
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Find clustered hits from a BLAST search☆121Updated 10 months ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated 2 weeks ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- MGnify genome analysis pipeline☆106Updated 2 months ago
- ☆31Updated 9 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆85Updated last month
- Pipeline for major biological analyses.☆35Updated 3 years ago
- An R package designed for drawing gene arrow maps☆90Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 8 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆123Updated last month
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆83Updated 7 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆72Updated 5 months ago
- Bioinformatics Tools☆90Updated this week
- gutSMASH☆55Updated this week
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 6 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆101Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆149Updated 3 weeks ago
- SINA - Reference based multiple sequence alignment☆41Updated 4 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- sensitive and precise assembly of short sequencing reads☆161Updated 11 months ago