glarue / jgi-query
A simple command-line tool to download data from Joint Genome Institute databases
☆47Updated last year
Related projects: ⓘ
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆28Updated 2 weeks ago
- Protein Alignment and Detection Interface☆60Updated 5 months ago
- Fast and flexible ORF finder☆54Updated 2 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆60Updated 2 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- gutSMASH☆51Updated 4 months ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆22Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆77Updated last year
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆46Updated 5 months ago
- Similarity networks of biosynthetic gene clusters☆61Updated this week
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆50Updated last month
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆20Updated 3 months ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆16Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆68Updated last year
- ☆35Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated last year
- A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).☆27Updated 7 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆28Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆33Updated 5 months ago
- ☆114Updated 3 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆28Updated 6 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆61Updated 2 weeks ago
- Statistical analysis for sparse high-throughput sequencing☆65Updated 6 months ago
- NLR annotation tool☆22Updated 6 months ago
- ☆23Updated last year
- ☆34Updated 2 months ago
- Logan Unitigs and Contigs☆85Updated last month
- Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.☆21Updated 7 years ago