glarue / jgi-query
A simple command-line tool to download data from Joint Genome Institute databases
☆50Updated 2 years ago
Alternatives and similar repositories for jgi-query:
Users that are interested in jgi-query are comparing it to the libraries listed below
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆34Updated 6 months ago
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- An R package designed for drawing gene arrow maps☆63Updated 3 weeks ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- ☆27Updated 2 months ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- CLI tool to annotate genes with KOfam☆77Updated last year
- ☆67Updated this week
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 7 months ago
- Detection of incorrectly labeled sequences across kingdoms☆82Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆58Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆91Updated last week
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆46Updated last month
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Fast and flexible ORF finder☆69Updated 3 years ago
- ☆31Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆130Updated this week
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆49Updated 3 months ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- ☆125Updated 6 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated 2 years ago
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Bioinformatics Tools☆86Updated this week