enasequence / ena-bulk-webincliLinks
Validate and submit reads using Webin-CLI in batch.
☆11Updated 2 years ago
Alternatives and similar repositories for ena-bulk-webincli
Users that are interested in ena-bulk-webincli are comparing it to the libraries listed below
Sorting:
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 4 years ago
- SARs-CoV-2 Primer schemes☆16Updated 4 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 5 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 3 weeks ago
- Systematic ProtEin AnnotatoR☆19Updated this week
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 4 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 6 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Fast viral consensus genome reconstruction☆23Updated 2 months ago
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- ☆17Updated last year
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- app to collapse Pango lineages for reporting☆12Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆22Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Documentation for analyzing SARS-Cov2 samples.☆11Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Webin command line submission program.☆33Updated this week
- Main development repository for SpreadGL☆19Updated 11 months ago
- Colinear block visualisation tool☆31Updated last year
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆18Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆31Updated 3 weeks ago