arq5x / nanopore-scripts
Various scripts and recipes for working with nanopore data
☆34Updated 8 years ago
Alternatives and similar repositories for nanopore-scripts:
Users that are interested in nanopore-scripts are comparing it to the libraries listed below
- Code for nanopore paper☆33Updated 9 years ago
- UCSC Nanopore☆43Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago