arq5x / nanopore-scriptsLinks
Various scripts and recipes for working with nanopore data
☆34Updated 9 years ago
Alternatives and similar repositories for nanopore-scripts
Users that are interested in nanopore-scripts are comparing it to the libraries listed below
Sorting:
- Code for nanopore paper☆33Updated 10 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- ☆29Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago