katholt / srst2Links
Short Read Sequence Typing for Bacterial Pathogens
☆142Updated 4 years ago
Alternatives and similar repositories for srst2
Users that are interested in srst2 are comparing it to the libraries listed below
Sorting:
- Pan-genome wide association studies☆205Updated last year
- BSR-Based Allele Calling Algorithm☆146Updated last week
- DAS Tool☆161Updated last year
- "Reads to report" for public health and clinical microbiology☆141Updated this week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆145Updated last week
- A user-friendly workflow for phylogenomics☆222Updated 3 weeks ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆196Updated 2 months ago
- Antimicrobial Resistance Identification By Assembly☆182Updated 2 years ago
- A tool to circularize genome assemblies☆249Updated last year
- snipit: summarise snps relative to your reference sequence☆162Updated 2 months ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆172Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆162Updated 7 months ago
- Metagenomic classification of long-read sequencing data☆97Updated 2 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆207Updated 3 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated last week
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- Convert various sequence formats to FASTA☆140Updated last week
- Create a tree using Mash distances☆177Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- ☆134Updated this week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 6 months ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 7 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated last month
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆113Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆114Updated 8 months ago