Alternatives and similar repositories for bio

Users that are interested in bio are comparing it to the libraries listed below

• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆91Updated 4 months ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆142Updated last month
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last month
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆106Updated 2 weeks ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated last month
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆56Updated 2 weeks ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆83Updated 3 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 4 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆97Updated 2 weeks ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆63Updated 5 years ago
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆52Updated 2 years ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆71Updated 3 weeks ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 6 months ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆69Updated 2 months ago
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆100Updated 4 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆124Updated last week
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆62Updated 2 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated last month
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆56Updated 11 months ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 3 years ago
• tao-bioinfo / PrimerServer2
  PrimerServer2: a high-throughput primer design and specificity-checking platform
  ☆80Updated 3 years ago
• biostars / biostar-handbook
  Issue tracker for the Biostar Handbook
  ☆64Updated 3 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 5 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• lpryszcz / bin
  My bioinfo toolbox
  ☆50Updated 10 months ago
• dstreett / FLASH2
  Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…
  ☆51Updated 7 years ago