Alternatives and similar repositories for bio

Users that are interested in bio are comparing it to the libraries listed below

• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated last month
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated 5 months ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆131Updated 3 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆108Updated last week
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆79Updated this week
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated last year
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• dstreett / FLASH2
  Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…
  ☆50Updated 7 years ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆52Updated this week
• ponnhide / PySanger
  A Python module to analyze Sanger sequencing results.
  ☆24Updated last year
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆102Updated 3 weeks ago
• Juke34 / awesome-awesomeness-bioinformatics
  A list of awesome awesomeness related to bioinformatics and associated fields
  ☆41Updated 5 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 2 months ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated last week
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆71Updated 2 months ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 7 months ago
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆33Updated 2 years ago
• bioinf-mcb / gisaid-scrapper
  Scrapping tool for GISAID data regarding SARS-CoV-2
  ☆41Updated 2 years ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆60Updated 4 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆80Updated this week
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆33Updated last year
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 4 months ago