ialbert / bioLinks
Making bioinformatics fun again
☆74Updated 3 months ago
Alternatives and similar repositories for bio
Users that are interested in bio are comparing it to the libraries listed below
Sorting:
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated last month
- Parse GFF3 into Pandas dataframes☆30Updated last year
- Merging paired-end reads and removing adapters☆46Updated this week
- Fast and flexible ORF finder☆75Updated 3 years ago
- What should perfect bioinformatic tools be like?☆132Updated 4 months ago
- gatk4 RNA variant calling pipeline☆53Updated this week
- A Python module to analyze Sanger sequencing results.☆24Updated last year
- Python bindings for the TaxonKit library☆40Updated 2 months ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆32Updated 2 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- A catalogue of available long read sequencing data analysis tools☆78Updated this week
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last month
- Config files used to define parameters specific to compute environments at different Institutions☆103Updated this week
- Nanopore Plasmid Sequencing☆33Updated last year
- ☆81Updated 2 weeks ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated last month
- viral-ngs: complete pipelines☆66Updated 3 weeks ago
- Analysis and Visualization of Ribosome Profiling Data☆31Updated 3 weeks ago
- An efficient CLI to extract sequences from the SRA☆112Updated last month
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆38Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆31Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆47Updated 2 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆116Updated last month
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated this week
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 3 weeks ago