Alternatives and similar repositories for RgeneticMap

Users that are interested in RgeneticMap are comparing it to the libraries listed below

• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• XuewenWangUGA / GMATA
  Software GMATA for SSR mining, marker designing, genotyping, plot etc.
  ☆15Updated 3 weeks ago
• liu3zhenlab / homotools
  ☆27Updated 2 months ago
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 3 years ago
• caulilin / QTG_Seq
  ☆22Updated 6 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 7 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆17Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆13Updated 3 months ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated 2 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated 2 years ago
• MaoYafei / GenoDup-Pipeline
  This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.
  ☆25Updated 6 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆24Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆44Updated last year
• Minglc / CisTrans-ECAS
  ☆10Updated last year
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 4 years ago
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 8 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated last year
• yongzhiyang2012 / WGDdetector
  ☆21Updated 6 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆16Updated 5 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆16Updated 4 months ago
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆19Updated 5 months ago