pinbo / RgeneticMapLinks
Draw genetic map (linkage map) in R
☆12Updated 8 years ago
Alternatives and similar repositories for RgeneticMap
Users that are interested in RgeneticMap are comparing it to the libraries listed below
Sorting:
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆16Updated last month
- ☆29Updated 2 years ago
- B73Ab10 genome assembly methods☆17Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- ☆27Updated 2 months ago
- ☆15Updated 3 years ago
- ☆16Updated 5 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆31Updated 5 months ago
- ☆22Updated 6 years ago
- ☆14Updated 3 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19Updated 6 months ago
- ☆43Updated last year
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆24Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆25Updated 3 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- ☆16Updated last year
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 8 months ago