OnlinePhylo / sts
Sequential Tree Sampler for online phylogenetics
☆16Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for sts
- Fast viral consensus genome reconstruction☆22Updated 4 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆14Updated 8 months ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆23Updated last month
- Library of sketching functions used by PopPUNK☆30Updated 7 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Colinear block visualisation tool☆30Updated 10 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆32Updated this week
- Find Unique genomic Regions☆29Updated this week
- Detect contigs of complete circular genomes☆21Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 3 years ago
- Kraken2 Server☆21Updated 10 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- ☆29Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Bacterial phylogenetics in BEAST 2.☆17Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 4 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Plasmid analysis using rearrangement distances☆30Updated last week
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Metagenomics-focused BAM file manipulation☆16Updated 5 years ago