NYU-BFX / RNA-Seq_Standard
☆11Updated 6 years ago
Alternatives and similar repositories for RNA-Seq_Standard
Users that are interested in RNA-Seq_Standard are comparing it to the libraries listed below
Sorting:
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Updated 5 years ago
- ☆12Updated 4 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆15Updated 6 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆12Updated 5 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 5 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- ☆16Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Paired-seq☆14Updated 10 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- Main repository for Drews et al. (Nature, 2022)☆40Updated last year
- ☆11Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- ☆10Updated 5 years ago