UCRajkumar / ecSegView external linksLinks
Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.
☆16May 22, 2025Updated 8 months ago
Alternatives and similar repositories for ecSeg
Users that are interested in ecSeg are comparing it to the libraries listed below
Sorting:
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆77Updated this week
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆29Oct 10, 2025Updated 4 months ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Micro DNA identification☆23Aug 5, 2021Updated 4 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ☆11Aug 3, 2018Updated 7 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆13Mar 29, 2024Updated last year
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- CHANGE-seq analysis pipeline☆11Dec 18, 2025Updated last month
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 3 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆157Jun 18, 2024Updated last year
- ☆12Dec 7, 2020Updated 5 years ago
- ☆12Feb 19, 2021Updated 4 years ago
- ☆12Nov 9, 2022Updated 3 years ago
- Paired-seq☆15Jul 17, 2024Updated last year
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆13Jun 29, 2025Updated 7 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆12Nov 1, 2022Updated 3 years ago
- TRUST4 manuscript evaluation☆16Jul 8, 2022Updated 3 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- ☆20Jun 26, 2025Updated 7 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- ☆19Apr 14, 2024Updated last year
- ☆15Aug 1, 2021Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- Empirical Bayes methods for single cell data☆16Oct 12, 2020Updated 5 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Apr 20, 2024Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis