wangjuan001 / hicplus
☆10Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for hicplus
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- ☆15Updated 4 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆35Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆17Updated last year
- ☆18Updated last year
- ☆40Updated 3 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- ☆12Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 4 months ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆12Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆14Updated last month
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆18Updated 7 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆15Updated 2 years ago
- ☆34Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆25Updated 9 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆42Updated last year
- ☆29Updated 2 years ago
- ChromSCape☆14Updated 9 months ago
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- ☆20Updated last year
- ☆27Updated 3 months ago
- ☆20Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆14Updated last month
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆17Updated 5 years ago