wangjuan001 / hicplusLinks
☆11Updated 3 years ago
Alternatives and similar repositories for hicplus
Users that are interested in hicplus are comparing it to the libraries listed below
Sorting:
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- ☆19Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- A toolkit for analyzing architectural stripes☆19Updated 6 months ago
- A collection of perl scripts for NGS analysis☆16Updated 8 months ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 2 months ago
- scGRO-seq analyses codes☆13Updated last year
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆34Updated last year
- ☆17Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated last year
- Statistically Significant loops from HiChIP data☆43Updated last year
- ☆17Updated 4 years ago
- ☆12Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- ☆17Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- ☆19Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 9 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆49Updated 10 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- ☆17Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago