wangjuan001 / hicplusLinks
☆12Updated 4 years ago
Alternatives and similar repositories for hicplus
Users that are interested in hicplus are comparing it to the libraries listed below
Sorting:
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ☆18Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated this week
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆33Updated 5 months ago
- A collection of perl scripts for NGS analysis☆16Updated 11 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 11 months ago
- ☆19Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆12Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆11Updated 3 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Statistically Significant loops from HiChIP data☆44Updated last year
- ☆35Updated 2 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 4 months ago
- ☆51Updated last year
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆17Updated last year
- ☆18Updated 4 years ago
- A toolkit for analyzing architectural stripes☆20Updated 9 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- Toolkit for single-cell DNA methylation analysis.☆42Updated last week
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- scGRO-seq analyses codes☆13Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆30Updated 5 months ago