☆17May 30, 2022Updated 3 years ago
Alternatives and similar repositories for Pepper3Dgenome
Users that are interested in Pepper3Dgenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- ☆11May 4, 2021Updated 5 years ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- ☆23Jul 27, 2023Updated 2 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆11May 12, 2021Updated 4 years ago
- ☆14Mar 28, 2025Updated last year
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆27Apr 16, 2025Updated last year
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 3 months ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- Dinoflagellate Annotation Workflow☆15Oct 3, 2022Updated 3 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- ☆12Dec 15, 2020Updated 5 years ago
- ☆17Oct 3, 2023Updated 2 years ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".☆13Mar 21, 2023Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 10 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- ☆16Jul 25, 2021Updated 4 years ago
- Analyses of sex chromosome evolution in songbirds☆17Jun 15, 2019Updated 6 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- HiCDCPlus☆19Jun 6, 2022Updated 3 years ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- ☆13Oct 7, 2019Updated 6 years ago
- Scripts of population genomics analysis☆36May 8, 2018Updated 8 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆271Jul 17, 2025Updated 9 months ago
- tomato graph pangenome☆91Dec 13, 2022Updated 3 years ago