yiliao1022 / Pepper3DgenomeLinks
☆15Updated 3 years ago
Alternatives and similar repositories for Pepper3Dgenome
Users that are interested in Pepper3Dgenome are comparing it to the libraries listed below
Sorting:
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Scripts that used in our chicken T2T manuscript.☆21Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆24Updated 2 years ago
- an efficient Hi-C data processing pipeline☆17Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- Code for TAD_SV project☆11Updated 3 years ago
- ☆24Updated 2 years ago
- R package to explore active transposable elements with RNA-seq data☆21Updated 2 years ago
- iTAK☆42Updated last year
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Updated 10 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- ☆17Updated 4 years ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆18Updated 7 years ago
- ☆42Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆33Updated 2 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated this week
- ☆27Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆48Updated 3 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year