☆19Mar 24, 2023Updated 3 years ago
Alternatives and similar repositories for basepairmodels
Users that are interested in basepairmodels are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- TF MOtif Discovery from Importance SCOres☆185May 13, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆20Mar 2, 2026Updated 4 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆92Sep 24, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆14Sep 1, 2024Updated last year
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆238Jun 9, 2026Updated 3 weeks ago
- ☆14Jun 14, 2019Updated 7 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated 3 weeks ago
- This repository hosts a minimal version of a Python API for BPNet.☆58Jan 24, 2026Updated 5 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆181Mar 19, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Biological sequence analysis for the modern age.☆302Jun 25, 2026Updated last week
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆21Updated this week
- ☆22Jul 2, 2020Updated 6 years ago
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- ☆16May 13, 2022Updated 4 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated last year
- A repo contains historical and updated MTEC libraries.☆19May 18, 2026Updated last month
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- Lab best practices and policies to conduct open, reproducible, and inspiring science that is efficient and fun☆12Jun 9, 2026Updated 3 weeks ago
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34May 19, 2026Updated last month
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆27May 29, 2023Updated 3 years ago
- ☆12Jan 6, 2026Updated 6 months ago
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated last year
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- Lightweight auxiliary python framework for writing object-oriented Dash code.☆13Feb 20, 2024Updated 2 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆161Jun 23, 2026Updated last week