kundajelab / basepairmodelsLinks
☆19Updated 2 years ago
Alternatives and similar repositories for basepairmodels
Users that are interested in basepairmodels are comparing it to the libraries listed below
Sorting:
- ☆39Updated last month
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- No Read Left Behind - Software for Motif Discovery from SELEX Data☆7Updated last year
- IDR☆31Updated 2 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated 4 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- ☆17Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Updated 5 months ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆27Updated 2 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 7 months ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆19Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 6 months ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆40Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 5 months ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Transcription Factor Enrichment Analysis☆35Updated last month
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Diverse sampling for single-cell datasets☆16Updated 5 years ago