Alternatives and similar repositories for basepairmodels

Users that are interested in basepairmodels are comparing it to the libraries listed below

• kundajelab / idr
  IDR
  ☆31Updated 2 years ago
• gagneurlab / absplice
  ☆39Updated 8 months ago
• open2c / cooler-binder
  Cooler demo using a Jupyter notebook Binder
  ☆18Updated 4 years ago
• nskvir / RepEnrich
  RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆27Updated 3 years ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆30Updated last year
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆47Updated 6 years ago
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆32Updated 4 months ago
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆26Updated 2 years ago
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 3 years ago
• JinLabBioinfo / HiCorr
  HiCorr: a Hi-C data bias-correction pipeline
  ☆28Updated 2 months ago
• dekkerlab / crane-nature-2015
  code associated with crane-nature-2015, 10.1038/nature14450
  ☆35Updated 9 years ago
• songlab-cal / scquint
  ☆17Updated last year
• LUMC / fastqsplitter
  Splits fastq files evenly
  ☆19Updated 4 years ago
• jmschrei / bpnet-lite
  This repository hosts a minimal version of a Python API for BPNet.
  ☆40Updated this week
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆28Updated last year
• BussemakerLab / NRLB
  No Read Left Behind - Software for Motif Discovery from SELEX Data
  ☆7Updated last year
• GuanLab / Anchor
  This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
  ☆20Updated 4 years ago
• physnano / rRNA_nanoSHAPE
  Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
  ☆13Updated 3 years ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 11 months ago
• yupenghe / REPTILE
  Predicting regulatory DNA elements based on epigenomic signatures
  ☆27Updated 11 months ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆28Updated 2 years ago
• rschwess / tutorial_dl_for_genomics
  A short tutorial to using DL and keras for genomics with sequence data.
  ☆15Updated 4 years ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆30Updated 2 months ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated last month
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆38Updated last year
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 4 months ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆24Updated 2 years ago
• mcvickerlab / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆23Updated 2 weeks ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆34Updated 4 years ago