A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
☆12Mar 22, 2023Updated 3 years ago
Alternatives and similar repositories for HiCoEx
Users that are interested in HiCoEx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- ☆32Sep 28, 2019Updated 6 years ago
- ☆14Jun 24, 2017Updated 8 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- G4Hunter (2012_2015)- IECB - Bordeaux☆17Apr 7, 2020Updated 5 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Mar 16, 2026Updated last week
- Accompanying code for the ProteinGLUE method☆12Apr 12, 2022Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated last week
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 4 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 6 months ago
- ☆16Jan 10, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆16Feb 18, 2018Updated 8 years ago
- GENome Organisation Visual Analytics☆15Dec 24, 2021Updated 4 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)☆30Sep 11, 2025Updated 6 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆177Mar 19, 2026Updated last week
- ☆21Dec 23, 2024Updated last year
- Single-cell Hi-C data analysis toolbox☆27Aug 13, 2021Updated 4 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Processing the DisGeNET database of disease–gene association☆22Mar 26, 2016Updated 10 years ago
- A model named ATMOL for predicting molecular property☆10May 2, 2022Updated 3 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- ☆44Dec 11, 2024Updated last year
- a computational tool for analyzing single cell Hi-C data☆25Apr 23, 2024Updated last year
- This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…☆18Nov 10, 2019Updated 6 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated last year
- ☆18Jun 22, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- polyApipe☆19Feb 10, 2025Updated last year
- Graph Convolutional Neural Networks for Alzheimer’s Classification with transfer learning and HPC methods☆12Sep 20, 2021Updated 4 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 7 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated 2 months ago
- Materials for Spring 2019 Applied Genomics Course☆21Apr 22, 2019Updated 6 years ago