A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
☆12Mar 22, 2023Updated 3 years ago
Alternatives and similar repositories for HiCoEx
Users that are interested in HiCoEx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 5 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 9 years ago
- ☆31Sep 28, 2019Updated 7 years ago
- ☆11Aug 30, 2021Updated 5 years ago
- ☆15Jun 24, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- ☆11Apr 4, 2023Updated 3 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 7 years ago
- computational tool to identify trasposable element insertions using Hi-C data☆10Sep 17, 2020Updated 6 years ago
- DeepG4: A deep learning approach to predict active G-quadruplexes☆14May 31, 2022Updated 4 years ago
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆21Apr 7, 2020Updated 6 years ago
- Paired Insertion Counting for snATAC-seq data☆19Aug 17, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆12Oct 21, 2026Updated last week
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆26Jul 1, 2026Updated 3 months ago
- ☆23Jul 27, 2023Updated 3 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 28, 2026Updated last month
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- ☆54Nov 24, 2025Updated 11 months ago
- ☆16Feb 18, 2018Updated 8 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆23Sep 12, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- ☆13Jul 31, 2025Updated last year
- ☆10Mar 20, 2024Updated 2 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆43Jul 6, 2023Updated 3 years ago
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Nov 1, 2018Updated 7 years ago
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 5 years ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- deepSRAMP is a accurate deep learning model for predicting m6A sites by fusing the sequence and genomic position features☆14Nov 29, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆188Mar 19, 2026Updated 7 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- ☆23Dec 23, 2024Updated last year
- Create a networkx.DiGraph object from a KEGG pathway file, with python☆11Aug 1, 2014Updated 12 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- A model named ATMOL for predicting molecular property☆10May 2, 2022Updated 4 years ago
- Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)☆33Sep 11, 2025Updated last year