Alternatives and similar repositories for HiCoEx

Users that are interested in HiCoEx are comparing it to the libraries listed below

• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆26Updated 2 years ago
• JiaqiLiZju / Nvwa
  ☆34Updated 2 years ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• jzhoulab / puffin_manuscript
  ☆17Updated 8 months ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆20Updated last year
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 4 years ago
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 7 years ago
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• landau-lab / Gotcha
  Pipeline for processing of GoT-ChA genotyping data and downstream analysis
  ☆14Updated 4 months ago
• wangjuan001 / hicplus
  ☆11Updated 3 years ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆25Updated 2 years ago
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆15Updated 5 years ago
• khuranalab / DeepMILO
  ☆7Updated 4 years ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆27Updated 3 years ago
• lulab / Ribowave
  Ribo-seq data analysis tool
  ☆9Updated 5 years ago
• cyang235 / LncADeep
  LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning
  ☆27Updated 7 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• zsq-berry / 3D-genome-tools
  ☆12Updated 2 years ago
• erhard-lab / price
  Improved Ribo-seq enables identification of cryptic translation events
  ☆14Updated 7 years ago
• xiongxslab / Translatomer
  ☆21Updated 5 months ago
• noambar / SerumMetabolomePredictions
  ☆21Updated 4 years ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆43Updated last year
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆24Updated last year
• aertslab / scATAC-seq_benchmark
  ☆17Updated last year
• wulabupenn / scNT-seq
  Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
  ☆16Updated 2 years ago
• rpmccordlab / SMILE
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Updated 2 years ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆23Updated 3 years ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆17Updated last week
• weng-lab / BENGI
  ☆19Updated 2 years ago
• OSU-BMBL / BMBL-analysis-notebooks
  A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…
  ☆13Updated 3 weeks ago