JieZheng-ShanghaiTech / HiCoExView external linksLinks
A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
☆12Mar 22, 2023Updated 2 years ago
Alternatives and similar repositories for HiCoEx
Users that are interested in HiCoEx are comparing it to the libraries listed below
Sorting:
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- GENome Organisation Visual Analytics☆15Dec 24, 2021Updated 4 years ago
- ☆14Jun 24, 2017Updated 8 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- ☆32Sep 28, 2019Updated 6 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆17Apr 7, 2020Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- ☆17Jan 3, 2019Updated 7 years ago
- Materials for Spring 2019 Applied Genomics Course☆21Apr 22, 2019Updated 6 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Paired Insertion Counting for snATAC-seq data☆19May 12, 2025Updated 9 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 5 months ago
- This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…☆18Nov 10, 2019Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 2 years ago
- ☆19Jun 8, 2023Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆21Dec 23, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- ☆25Sep 9, 2025Updated 5 months ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Sep 27, 2025Updated 4 months ago
- A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence☆23Jul 8, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 5 months ago
- a computational tool for analyzing single cell Hi-C data☆25Apr 23, 2024Updated last year
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- ☆26Apr 3, 2019Updated 6 years ago
- ☆22Oct 6, 2023Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Aug 13, 2021Updated 4 years ago
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆174Oct 10, 2025Updated 4 months ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Jun 30, 2021Updated 4 years ago