A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
☆12Mar 22, 2023Updated 3 years ago
Alternatives and similar repositories for HiCoEx
Users that are interested in HiCoEx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Sep 9, 2025Updated last year
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 5 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆53Jul 21, 2017Updated 9 years ago
- ☆15Jun 24, 2017Updated 9 years ago
- ☆32Sep 28, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆21Apr 7, 2020Updated 6 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆26Jul 1, 2026Updated 2 months ago
- Accompanying code for the ProteinGLUE method☆13Apr 12, 2022Updated 4 years ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆12Updated this week
- Paired Insertion Counting for snATAC-seq data☆19Aug 17, 2026Updated last month
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆23Sep 12, 2023Updated 3 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated last year
- Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)☆34Sep 11, 2025Updated last year
- Hybrid function sparse representation (HFSR) for super resolution☆11Dec 20, 2019Updated 6 years ago
- ☆16Feb 18, 2018Updated 8 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆185Mar 19, 2026Updated 6 months ago
- ☆23Dec 23, 2024Updated last year
- Color DNA/RNA bases in terminal output☆22Aug 29, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 5 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- ☆10Jan 5, 2024Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- A model named ATMOL for predicting molecular property☆10May 2, 2022Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…☆19Nov 10, 2019Updated 6 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆46Dec 11, 2024Updated last year
- ☆12Feb 16, 2025Updated last year
- Drug Discovery Intelligence plugin for Claude Code. AI-powered target validation, competitive intelligence, literature analysis & clinic…☆18Jan 4, 2026Updated 8 months ago
- Processing the DisGeNET database of disease–gene association☆25Mar 26, 2016Updated 10 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Graph Convolutional Neural Networks for Alzheimer’s Classification with transfer learning and HPC methods☆12Sep 20, 2021Updated 5 years ago
- Predicting protein subcellular localization using deep learning☆16Sep 13, 2019Updated 7 years ago