ai4protein / VenusREMLinks
𧬠Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
β111Updated 3 months ago
Alternatives and similar repositories for VenusREM
Users that are interested in VenusREM are comparing it to the libraries listed below
Sorting:
- Official repository of EnzymeFlowβ95Updated 11 months ago
- Official repository for DiffPepBuilder and DiffPepDock toolsβ107Updated 3 weeks ago
- Sidechain conditioning and modeling for full-atom protein sequence designβ126Updated last week
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",β¦β88Updated 5 months ago
- Public Release of ProGen3 family of Modelsβ87Updated 4 months ago
- β126Updated 5 months ago
- β117Updated 5 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.β60Updated 2 years ago
- Official Implementation of IgGMβ159Updated last month
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"β119Updated 8 months ago
- Aligning protein generative models with experimental fitnessβ111Updated last month
- VenusFSFP: Few-Shot Protein Fitness Predictionβ101Updated this week
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.β98Updated last year
- β114Updated 2 years ago
- β220Updated 3 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluationβ77Updated 3 months ago
- AlphaBind code + model accompanying pre-printβ85Updated 3 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.β84Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"β121Updated 8 months ago
- Structure-conditioned masked language modeling for protein sequence designβ69Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)β46Updated 11 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-proteiβ¦β46Updated 2 weeks ago
- Code for humanization of antibody and nanobodyβ63Updated 2 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteinsβ115Updated 5 months ago
- β65Updated 2 years ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modelingβ105Updated 3 weeks ago