Alternatives and similar repositories for VenusPLM

Users that are interested in VenusPLM are comparing it to the libraries listed below

• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆69Updated 5 months ago
• zhanghaicang / carbonmatrix_public
  ☆119Updated 6 months ago
• Gonglab-THU / SPIRED-Fitness
  ☆46Updated 6 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆68Updated 4 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆67Updated 4 months ago
• ai4protein / Pro-Prime
  ☆75Updated 4 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆102Updated last month
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆62Updated 3 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆85Updated 2 weeks ago
• tyang816 / ProtSolM
  📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).
  ☆24Updated 7 months ago
• Gonglab-THU / GeoStab
  ☆39Updated last year
• Kuhlman-Lab / evopro
  ☆93Updated 2 months ago
• bzho3923 / ProtLGN
  ☆33Updated last year
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆59Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆80Updated 4 months ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆38Updated 6 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆49Updated 2 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆70Updated 9 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆73Updated 3 weeks ago
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆44Updated 4 months ago
• danny305 / StabilityOracle
  ☆29Updated 2 months ago
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆25Updated last year
• ELELAB / RosettaDDGPrediction
  ☆84Updated last month
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆65Updated 10 months ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆65Updated 2 years ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆131Updated last month
• regeneron-mpds / propermab
  ☆43Updated 8 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 2 months ago