Versatile Embedding Network for Understanding protein Sequences
β26May 16, 2025Updated last year
Alternatives and similar repositories for VenusPLM
Users that are interested in VenusPLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 𧬠Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)β141Apr 25, 2026Updated 3 months ago
- π AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals.β247Jul 28, 2026Updated 2 weeks ago
- 𧬠Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2β¦β97Jul 20, 2026Updated 3 weeks ago
- The pytorch code of TDFoldβ21Feb 25, 2026Updated 5 months ago
- 𧬠Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)β25Apr 10, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- code for SeqDance/ESMDance, biophysics-informed protein language modelsβ61Jan 28, 2026Updated 6 months ago
- β84Aug 26, 2025Updated 11 months ago
- Source code for IRL-INR (ICML 2023)β21May 27, 2023Updated 3 years ago
- π Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modβ¦β27May 16, 2025Updated last year
- β61May 29, 2025Updated last year
- β25Jun 10, 2026Updated 2 months ago
- Public Release of ProGen3 family of Modelsβ114Jul 21, 2025Updated last year
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Modelsβ27Jun 3, 2025Updated last year
- β29May 26, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PLMSearch enables accurate and fast homologous protein search with only sequences as inputβ81Sep 9, 2025Updated 11 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequencesβ105Apr 24, 2024Updated 2 years ago
- A Novel Approach for Protein Sequence Design Based on Secondary Strucureβ24Mar 7, 2025Updated last year
- β15Jun 25, 2026Updated last month
- β68Jul 15, 2026Updated last month
- Shrinking Proteins with Diffusionβ31Jan 8, 2026Updated 7 months ago
- Benchmarking code accompanying the release of `bioemu`β65Jul 21, 2026Updated 3 weeks ago
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attentionβ¦β19Jun 11, 2025Updated last year
- GerNA-Bind: Geometric-enhanced RNA-ligand Binding Specificity Prediction with Deep Learningβ30Dec 15, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- β36Feb 4, 2026Updated 6 months ago
- 𧬠Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)β159Jul 20, 2026Updated 3 weeks ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".β39Jul 22, 2025Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.β17May 4, 2026Updated 3 months ago
- VenusFSFP: Few-Shot Protein Fitness Predictionβ119Nov 18, 2025Updated 8 months ago
- Snakemake implementation of protein structure alignment software DaliLite v5β15Mar 12, 2025Updated last year
- All-atom inverse protein folding through discrete flow matching (ICML2025)β42Mar 22, 2026Updated 4 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)β88Apr 21, 2026Updated 3 months ago
- Efficient implementatin of ESM family.β86Sep 9, 2025Updated 11 months ago
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion spaceβ35Jun 22, 2026Updated last month
- Deep generative modeling of protein structural ensemblesβ41May 27, 2026Updated 2 months ago
- Fast and Interpretable Protein Substructure Alignment via Optimal Transport (ICLR 2026)β27Jun 26, 2026Updated last month
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)β41Jul 9, 2023Updated 3 years ago
- β17May 16, 2025Updated last year
- β40Jun 17, 2025Updated last year
- β43Jun 12, 2025Updated last year