Alternatives and similar repositories for AMPLIFY:

Users that are interested in AMPLIFY are comparing it to the libraries listed below

• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆97Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆59Updated 2 weeks ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆81Updated 3 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆104Updated last month
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆48Updated this week
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆96Updated 4 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆58Updated 3 years ago
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆30Updated 5 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆43Updated last month
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆27Updated 5 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆143Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆137Updated 4 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆57Updated 9 months ago
• zhanghaicang / carbonmatrix_public
  ☆105Updated 3 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆74Updated this week
• varun-shanker / structural-evolution
  ☆91Updated 6 months ago
• wengong-jin / DSMBind
  ☆80Updated 3 months ago
• amyxlu / plaid
  Multimodal generation of protein sequence and all-atom structure using latent diffusion, with compositional function and taxonomic prompt…
  ☆63Updated last month
• alexechu / protpardelle
  ☆66Updated last year
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆88Updated last month
• westlake-repl / SaprotHub
  SaprotHub: Making Protein Modeling Accessible to All Biologists
  ☆89Updated this week
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆90Updated this week
• Kuhlman-Lab / evopro
  ☆72Updated this week
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆124Updated this week
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆45Updated 6 months ago
• levinthal / Pallatom
  ☆73Updated 3 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆68Updated 2 weeks ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆76Updated 3 weeks ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆57Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆73Updated 7 months ago