chandar-lab / AMPLIFY

Related projects ⓘ

Alternatives and complementary repositories for AMPLIFY

• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆83Updated 2 weeks ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆73Updated last month
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆137Updated last year
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆68Updated 6 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆85Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆51Updated 7 months ago
• aqlaboratory / genie2
  Protein structure diffusion model for unconditional protein generation and motif scaffolding
  ☆124Updated 5 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆94Updated last month
• varun-shanker / structural-evolution
  ☆83Updated 4 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆126Updated 2 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆70Updated 5 months ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆59Updated this week
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…
  ☆82Updated last month
• wengong-jin / DSMBind
  ☆75Updated last month
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆93Updated 7 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆130Updated last month
• alexechu / protpardelle
  ☆66Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆56Updated 3 years ago
• BytedProtein / ByProt
  ☆159Updated 2 months ago
• zhanghaicang / carbonmatrix_public
  ☆96Updated last month
• westlake-repl / SaprotHub
  SaprotHub: Making Protein Modeling Accessible to All Biologists
  ☆69Updated this week
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆51Updated last year
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆42Updated 3 months ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆26Updated 3 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆94Updated 2 years ago
• Kuhlman-Lab / evopro
  ☆70Updated 7 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆68Updated 3 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆120Updated 5 months ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆111Updated this week
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆60Updated 9 months ago