Alternatives and similar repositories for AMPLIFY

Users that are interested in AMPLIFY are comparing it to the libraries listed below

• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆127Updated 2 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆117Updated 3 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆146Updated last month
• varun-shanker / structural-evolution
  ☆122Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆80Updated 5 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆149Updated 9 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆114Updated 3 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆91Updated last year
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆89Updated 6 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆76Updated 4 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆152Updated 2 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆86Updated last year
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆179Updated 2 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆180Updated last year
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆104Updated 9 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆142Updated 10 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆171Updated 2 months ago
• SantiagoMille / germinal
  Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
  ☆182Updated 2 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆110Updated last year
• zhanghaicang / carbonmatrix_public
  ☆118Updated last month
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆131Updated 3 weeks ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆70Updated 5 months ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆115Updated 8 months ago
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆56Updated 3 months ago
• levinthal / Pallatom
  ☆133Updated 8 months ago
• robpearc / DeepFoldRNA
  ☆38Updated 2 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆157Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆133Updated 4 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆120Updated 8 months ago