Alternatives and similar repositories for AMPLIFY

Users that are interested in AMPLIFY are comparing it to the libraries listed below

• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆116Updated 4 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆74Updated 6 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆102Updated 2 months ago
• varun-shanker / structural-evolution
  ☆112Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆59Updated 6 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆131Updated 3 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆106Updated 4 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆78Updated last year
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆68Updated 6 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆94Updated 3 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆102Updated 10 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆67Updated 2 weeks ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆82Updated last year
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆115Updated this week
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆65Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆68Updated 3 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆181Updated 5 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆128Updated 2 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆159Updated 10 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆87Updated last year
• AbSciBio / igdesign
  ☆43Updated 6 months ago
• zhanghaicang / carbonmatrix_public
  ☆115Updated last month
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆60Updated 2 years ago
• levinthal / Pallatom
  ☆106Updated 2 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆155Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆102Updated 2 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆85Updated 3 weeks ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆144Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆128Updated 3 years ago
• yehlincho / BoltzDesign1
  ☆186Updated 2 weeks ago