chandar-lab / AMPLIFY

Related projects ⓘ

Alternatives and complementary repositories for AMPLIFY

• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆81Updated this week
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆68Updated 3 weeks ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆56Updated 3 years ago
• yikunpku / RNA-MSM
  Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…
  ☆48Updated 3 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆51Updated 6 months ago
• varun-shanker / structural-evolution
  ☆81Updated 4 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆94Updated last month
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…
  ☆81Updated 3 weeks ago
• westlake-repl / SaprotHub
  SaprotHub: Making Protein Modeling Accessible to All Biologists
  ☆66Updated this week
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆40Updated 3 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆67Updated 3 months ago
• alexechu / protpardelle
  ☆66Updated last year
• wengong-jin / DSMBind
  ☆75Updated 3 weeks ago
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆22Updated 2 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆67Updated 5 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆51Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆47Updated 6 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆135Updated last year
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆128Updated last month
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆93Updated 6 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆42Updated last month
• zhanghaicang / carbonmatrix_public
  ☆94Updated 2 weeks ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆70Updated 4 months ago
• aqlaboratory / genie2
  Protein structure diffusion model for unconditional protein generation and motif scaffolding
  ☆123Updated 4 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆122Updated 2 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆58Updated 9 months ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆24Updated 2 months ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆52Updated this week
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆75Updated last month