Code and model weights for PoET-2, a retrieval-augmented multimodel protein language model for protein sequence generation and representation learning
☆31Aug 20, 2025Updated last year
Alternatives and similar repositories for PoET-2
Users that are interested in PoET-2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repository for the Protriever paper☆17Jun 5, 2025Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- Code for AlphaFold Distillation for Protein Design☆29Sep 18, 2025Updated last year
- ☆25Sep 25, 2026Updated last month
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆47Aug 5, 2025Updated last year
- ☆12Aug 25, 2026Updated 2 months ago
- ☆27Nov 28, 2025Updated 11 months ago
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆51Aug 8, 2026Updated 2 months ago
- ☆159May 18, 2026Updated 5 months ago
- Reference-free analysis of genetic architecture☆24Sep 21, 2024Updated 2 years ago
- ☆12Dec 6, 2025Updated 10 months ago
- ☆43Mar 30, 2025Updated last year
- Potts model-based protein sequence design☆120Jul 1, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆55Dec 3, 2024Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆148Sep 29, 2026Updated last month
- Efficient implementatin of ESM family.☆89Sep 9, 2025Updated last year
- Steering discrete diffusion models with labeled data for protein fitness optimization☆31Nov 1, 2025Updated 11 months ago
- ☆12Nov 16, 2023Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆83Aug 27, 2026Updated 2 months ago
- ☆15Apr 17, 2025Updated last year
- ☆34Jun 9, 2026Updated 4 months ago
- Tokenizing Loops of Antibodies☆38Nov 23, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆313Sep 23, 2025Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 7 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆143Apr 23, 2026Updated 6 months ago
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models☆31Oct 8, 2026Updated 3 weeks ago
- Aligning protein generative models with experimental fitness☆154Mar 12, 2026Updated 7 months ago
- Code for Branched Schrödinger Bridge Matching (ICLR 2026)☆20Mar 20, 2026Updated 7 months ago
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 7 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆39Apr 2, 2025Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 7 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆166Sep 29, 2026Updated last month
- ☆121Dec 7, 2022Updated 3 years ago
- Official implementation of "Rigidity-Aware Geometric Pretraining for Protein Design and Conformational Ensembles" (ICLR 2026)☆20Mar 16, 2026Updated 7 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆126May 27, 2025Updated last year
- A benchmark dataset for epitope-specific antibody design [Transactions on ML Research - TMLR]☆43Jun 9, 2026Updated 4 months ago