Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
β72Aug 13, 2025Updated last year
Alternatives and similar repositories for ProMEP
Users that are interested in ProMEP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β26Oct 8, 2024Updated last year
- 𧬠Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2β¦β97Jul 20, 2026Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metricsβ72Feb 21, 2026Updated 6 months ago
- 𧬠Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)β145Apr 25, 2026Updated 4 months ago
- β40Sep 17, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)β53Dec 3, 2024Updated last year
- PLM based active learning model for protein engineeringβ86Aug 6, 2024Updated 2 years ago
- β118Jan 3, 2026Updated 8 months ago
- Official repository of GENzymeβ67Nov 29, 2024Updated last year
- ML-optimized library design with improved fitness and diversity for protein engineeringβ37Nov 5, 2025Updated 9 months ago
- β40Jun 17, 2025Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cleβ¦β40Jul 25, 2024Updated 2 years ago
- Physical energy function for protein sequence designβ44May 6, 2023Updated 3 years ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shoβ¦β376Jun 11, 2025Updated last year
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- π Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).β36May 16, 2025Updated last year
- Deconvolving mutation effects on protein stability and function with disentangled protein language modelsβ18May 15, 2026Updated 3 months ago
- β28Dec 2, 2024Updated last year
- 𧬠Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)β160Jul 20, 2026Updated last month
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language modelsβ64Feb 3, 2026Updated 7 months ago
- β36Feb 4, 2026Updated 7 months ago
- β33Aug 12, 2024Updated 2 years ago
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".β19Jan 4, 2025Updated last year
- β74Feb 13, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A generalized enzyme kinetics parameter prediction model.β98Oct 2, 2025Updated 11 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequencesβ107Apr 24, 2024Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutantsβ265Mar 26, 2026Updated 5 months ago
- Structure-Informed Protein Language Modelβ40Feb 15, 2024Updated 2 years ago
- Official repository for the ProteinGym benchmarksβ469Mar 25, 2026Updated 5 months ago
- β15Mar 28, 2025Updated last year
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)β215May 15, 2026Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineeringβ85Oct 24, 2025Updated 10 months ago
- β42Aug 20, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β32Oct 7, 2025Updated 10 months ago
- β145Jun 3, 2025Updated last year
- Graphormer Based Protein Sequence Designβ26Feb 2, 2024Updated 2 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)β629Mar 8, 2026Updated 5 months ago
- β26Dec 11, 2024Updated last year
- β150Jul 16, 2025Updated last year
- Generative diverse protein backbones by protein language modelβ35Feb 27, 2026Updated 6 months ago