Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
β71Aug 13, 2025Updated 10 months ago
Alternatives and similar repositories for ProMEP
Users that are interested in ProMEP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β26Oct 8, 2024Updated last year
- 𧬠Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2β¦β92Apr 10, 2026Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metricsβ72Feb 21, 2026Updated 3 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)β52Dec 3, 2024Updated last year
- β40Sep 17, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PLM based active learning model for protein engineeringβ86Aug 6, 2024Updated last year
- Official repository of GENzymeβ64Nov 29, 2024Updated last year
- β119Jan 3, 2026Updated 5 months ago
- ML-optimized library design with improved fitness and diversity for protein engineeringβ37Nov 5, 2025Updated 7 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cleβ¦β38Jul 25, 2024Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shoβ¦β361Jun 11, 2025Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineeringβ83Oct 24, 2025Updated 7 months ago
- 𧬠Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)β133Apr 25, 2026Updated last month
- A generalized enzyme kinetics parameter prediction model.β92Oct 2, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language modelsβ63Feb 3, 2026Updated 4 months ago
- Physical energy function for protein sequence designβ38May 6, 2023Updated 3 years ago
- Generative diverse protein backbones by protein language modelβ35Feb 27, 2026Updated 3 months ago
- β25Dec 2, 2024Updated last year
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)β207May 15, 2026Updated last month
- 𧬠Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)β153Apr 10, 2026Updated 2 months ago
- Steering discrete diffusion models with labeled data for protein fitness optimizationβ28Nov 1, 2025Updated 7 months ago
- β33Aug 12, 2024Updated last year
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".β18Jan 4, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- β74Feb 13, 2026Updated 4 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutantsβ257Mar 26, 2026Updated 2 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequencesβ100Apr 24, 2024Updated 2 years ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant β¦β44Aug 5, 2025Updated 10 months ago
- Protein representation and design under a single training schemeβ24May 17, 2026Updated 3 weeks ago
- Structure-Informed Protein Language Modelβ38Feb 15, 2024Updated 2 years ago
- Official repository for the ProteinGym benchmarksβ435Mar 25, 2026Updated 2 months ago
- Graphormer Based Protein Sequence Designβ26Feb 2, 2024Updated 2 years ago
- β15Mar 28, 2025Updated last year
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- β139Jun 3, 2025Updated last year
- β31Oct 7, 2025Updated 8 months ago
- code and source data for de novo design of Kemp elimination paperβ26Sep 18, 2025Updated 8 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)β605Mar 8, 2026Updated 3 months ago
- A conditionally adapted protein language model for the generation of enzymesβ24Nov 26, 2024Updated last year
- β150Jul 16, 2025Updated 10 months ago
- β40Jun 17, 2025Updated 11 months ago