Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
β71Aug 13, 2025Updated 8 months ago
Alternatives and similar repositories for ProMEP
Users that are interested in ProMEP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β26Oct 8, 2024Updated last year
- 𧬠Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2β¦β89Updated this week
- Generating and scoring novel enzyme sequences with a variety of models and metricsβ72Feb 21, 2026Updated last month
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)β50Dec 3, 2024Updated last year
- β40Sep 17, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PLM based active learning model for protein engineeringβ86Aug 6, 2024Updated last year
- Official repository of GENzymeβ63Nov 29, 2024Updated last year
- β117Jan 3, 2026Updated 3 months ago
- ML-optimized library design with improved fitness and diversity for protein engineeringβ37Nov 5, 2025Updated 5 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cleβ¦β39Jul 25, 2024Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shoβ¦β351Jun 11, 2025Updated 10 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineeringβ83Oct 24, 2025Updated 5 months ago
- 𧬠Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)β127Updated this week
- β24Dec 2, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A generalized enzyme kinetics parameter prediction model.β81Oct 2, 2025Updated 6 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language modelsβ61Feb 3, 2026Updated 2 months ago
- Physical energy function for protein sequence designβ38May 6, 2023Updated 2 years ago
- Generative diverse protein backbones by protein language modelβ34Feb 27, 2026Updated last month
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Modelβ203Feb 14, 2026Updated 2 months ago
- 𧬠Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)β149Updated this week
- Steering discrete diffusion models with labeled data for protein fitness optimizationβ28Nov 1, 2025Updated 5 months ago
- β33Aug 12, 2024Updated last year
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".β18Jan 4, 2025Updated last year
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- β74Feb 13, 2026Updated 2 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutantsβ238Mar 26, 2026Updated 2 weeks ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequencesβ96Apr 24, 2024Updated last year
- Official repository for the ProteinGym benchmarksβ413Mar 25, 2026Updated 3 weeks ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant β¦β44Aug 5, 2025Updated 8 months ago
- Protein representation and design under a single training schemeβ24Mar 3, 2026Updated last month
- Structure-Informed Protein Language Modelβ38Feb 15, 2024Updated 2 years ago
- Graphormer Based Protein Sequence Designβ26Feb 2, 2024Updated 2 years ago
- β16Mar 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β137Jun 3, 2025Updated 10 months ago
- code and source data for de novo design of Kemp elimination paperβ25Sep 18, 2025Updated 6 months ago
- β31Oct 7, 2025Updated 6 months ago
- β19Updated this week
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)β585Mar 8, 2026Updated last month
- A conditionally adapted protein language model for the generation of enzymesβ23Nov 26, 2024Updated last year
- β149Jul 16, 2025Updated 8 months ago