Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
☆104Apr 15, 2026Updated 2 weeks ago
Alternatives and similar repositories for Pythia
Users that are interested in Pythia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- PPI version of Pythia☆34Apr 15, 2026Updated 2 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆247Mar 26, 2026Updated last month
- ☆87Nov 25, 2025Updated 5 months ago
- ☆74Feb 13, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Feb 21, 2026Updated 2 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- ☆79Aug 26, 2025Updated 8 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 5 months ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- ☆150Jul 16, 2025Updated 9 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆83Oct 24, 2025Updated 6 months ago
- ☆20Oct 4, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆355Jun 11, 2025Updated 10 months ago
- Rifdock Library for Conformational Search☆172May 16, 2024Updated last year
- ☆97Oct 14, 2025Updated 6 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- ☆27Aug 8, 2025Updated 8 months ago
- ☆57Apr 15, 2026Updated 2 weeks ago
- ☆567Feb 6, 2025Updated last year
- ☆62Apr 9, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆235Aug 27, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated last year
- ☆75Mar 23, 2026Updated last month
- Public RFDiffusionAA repo☆480Jul 9, 2024Updated last year
- ☆150Aug 17, 2022Updated 3 years ago
- The gmx_rrcs script is designed to calculate the residues-residues contact scores (rrcs) from a trajectory file generated by GROMACS.☆18Jun 16, 2025Updated 10 months ago
- ☆81Jun 29, 2025Updated 10 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- ☆21Oct 31, 2024Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for ColabDock paper☆154May 1, 2025Updated last year
- Making Protein Language Modeling Accessible to All Biologists☆161Updated this week
- ☆23Jul 14, 2023Updated 2 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆88Dec 3, 2025Updated 4 months ago
- Rosetta Funclib☆25May 9, 2020Updated 5 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆591Mar 8, 2026Updated last month
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆25Mar 22, 2026Updated last month