tyang816 / SES-Adapter
π Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modeling 2024).
β21Updated 3 weeks ago
Alternatives and similar repositories for SES-Adapter
Users that are interested in SES-Adapter are comparing it to the libraries listed below
Sorting:
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraintsβ32Updated 4 months ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Modelsβ15Updated last year
- Code of βMulti-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sitesββ33Updated 2 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusionβ58Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.β59Updated last year
- β60Updated this week
- A comprehensive benchmark on the performances of multiple protein backbone generative models.β55Updated 3 weeks ago
- Structure-conditioned masked language modeling for protein sequence designβ62Updated last year
- β66Updated last month
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoopβ12Updated 11 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)β35Updated last year
- Code for the paper "Learning to engineer protein flexibility".β17Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-proteiβ¦β42Updated 5 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.β43Updated 2 months ago
- β32Updated last year
- Extension of ThermoMPNN for double mutant predictionsβ32Updated 2 months ago
- The first 100B protein language model from biomapβ13Updated 2 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language modelsβ35Updated this week
- β30Updated 9 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language modelsβ34Updated last month
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure predβ¦β54Updated 2 months ago
- β23Updated 7 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.β65Updated last month
- 𧬠Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)β64Updated 3 weeks ago
- β18Updated 6 months ago
- Multimodal Pretraining for Unsupervised Protein Representation Learningβ22Updated 9 months ago
- Baseline model for PPB-Affinity benchmark dataβ24Updated 5 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user exβ¦β42Updated 5 months ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formatsβ12Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",β¦β70Updated 6 months ago