tyang816 / SES-AdapterLinks
🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modeling 2024).
☆23Updated last month
Alternatives and similar repositories for SES-Adapter
Users that are interested in SES-Adapter are comparing it to the libraries listed below
Sorting:
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- ☆67Updated 3 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆46Updated last week
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Adapting protein language models for structure-conditioned design☆38Updated 10 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆37Updated 3 months ago
- ☆28Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆43Updated 7 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆62Updated last week
- Code for the paper "Learning to engineer protein flexibility".☆18Updated 2 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆61Updated last month
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆12Updated 2 years ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆56Updated 3 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆37Updated 5 months ago
- Structure-Informed Protein Language Model☆34Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 7 months ago
- Open source code for AlphaFold.☆39Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆49Updated last month
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆37Updated 2 weeks ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated last year
- ☆28Updated last month
- ☆33Updated last year
- Generative diverse protein backbones by protein language model☆32Updated 6 months ago
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆12Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆41Updated last month
- ☆19Updated 7 months ago