tyang816 / SES-AdapterLinks
π Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modeling 2024).
β25Updated 7 months ago
Alternatives and similar repositories for SES-Adapter
Users that are interested in SES-Adapter are comparing it to the libraries listed below
Sorting:
- β27Updated last year
- Code for the paper "Learning to engineer protein flexibility".β22Updated last month
- A comprehensive benchmark on the performances of multiple protein backbone generative models.β64Updated 7 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.β51Updated 5 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.β60Updated 2 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocolβ33Updated 2 years ago
- Baseline model for PPB-Affinity benchmark dataβ34Updated 7 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraintsβ44Updated 6 months ago
- 𧬠Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2β¦β79Updated 7 months ago
- Structure-conditioned masked language modeling for protein sequence designβ69Updated last year
- β72Updated 9 months ago
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexesβ48Updated 2 months ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative modelsβ39Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)β35Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user exβ¦β53Updated 2 weeks ago
- β25Updated last year
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.β72Updated 9 months ago
- Code of βMulti-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sitesββ45Updated last month
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.β27Updated last year
- β46Updated last year
- Adapting protein language models for structure-conditioned designβ40Updated last year
- β34Updated 2 years ago
- β99Updated 3 weeks ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusionβ58Updated last year
- 𧬠Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)β116Updated 4 months ago
- protein structure generation with sparse all-atom denoising modelsβ52Updated 3 weeks ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.β57Updated 7 months ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational mβ¦β10Updated 3 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language modelsβ41Updated 8 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",β¦β91Updated 6 months ago