Alternatives and similar repositories for ProTrek

Users that are interested in ProTrek are comparing it to the libraries listed below

• westlake-repl / SaprotHub
  Making Protein Language Modeling Accessible to All Biologists
  ☆121Updated last week
• westlake-repl / Denovo-Pinal
  Text-guided protein design
  ☆87Updated last month
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆139Updated 5 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆164Updated 6 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆198Updated 2 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 5 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆164Updated last year
• varun-shanker / structural-evolution
  ☆114Updated last year
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆153Updated 2 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆300Updated 4 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆66Updated 2 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆120Updated 2 years ago
• uw-ipd / RoseTTAFold2
  ☆199Updated 6 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆148Updated last week
• zchwang / CataPro
  A generalized enzyme kinetics parameter prediction model.
  ☆64Updated 3 weeks ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆217Updated 2 years ago
• zhanghaicang / carbonmatrix_public
  ☆116Updated 4 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆115Updated 7 months ago
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆171Updated 2 years ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆240Updated last week
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆203Updated 8 months ago
• twopin / CAMP
  predicting peptide-protein interactions
  ☆135Updated last year
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆47Updated last year
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆98Updated last month
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆164Updated last year
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆206Updated 5 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆274Updated 9 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 7 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆104Updated 3 weeks ago
• ikalvet / heme_binder_diffusion
  ☆139Updated 3 months ago