Alternatives and similar repositories for ProTrek

Users that are interested in ProTrek are comparing it to the libraries listed below

• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆113Updated last week
• westlake-repl / Denovo-Pinal
  Text-guided protein design
  ☆72Updated 2 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆151Updated 8 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆113Updated 3 months ago
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆124Updated 3 weeks ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆174Updated 4 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆81Updated 10 months ago
• varun-shanker / structural-evolution
  ☆109Updated 11 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 6 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆141Updated last month
• zhanghaicang / carbonmatrix_public
  ☆115Updated 2 weeks ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆126Updated 3 weeks ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆101Updated 3 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆62Updated last year
• levinthal / Pallatom
  ☆95Updated 3 weeks ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆109Updated 5 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆110Updated 4 months ago
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆98Updated 4 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆145Updated 2 months ago
• ikalvet / heme_binder_diffusion
  ☆130Updated 8 months ago
• yehlincho / BoltzDesign1
  ☆152Updated 2 weeks ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆73Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆73Updated 5 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆141Updated 4 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆102Updated last year
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆158Updated 3 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆151Updated last year
• ai4protein / Pro-Prime
  ☆63Updated last month
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago