ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)
☆219May 15, 2026Updated 4 months ago
Alternatives and similar repositories for ProTrek
Users that are interested in ProTrek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Making Protein Language Modeling Accessible to All Biologists☆169Sep 29, 2026Updated last week
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆638Mar 8, 2026Updated 7 months ago
- Evolla: A frontier protein-language generative model designed to decode the molecular language of proteins.☆73Apr 13, 2026Updated 5 months ago
- Programmable Design of Functional Proteins from Natural Language☆99Jul 21, 2026Updated 2 months ago
- Public Release of ProGen3 family of Models☆115Jul 21, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆103Jul 9, 2026Updated 3 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆112Jan 11, 2025Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆147Sep 29, 2026Updated last week
- 🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals. (ACL Demo202…☆252Sep 25, 2026Updated 2 weeks ago
- ☆26Oct 8, 2024Updated 2 years ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆379Jun 11, 2025Updated last year
- ☆145Jun 3, 2025Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆276Sep 9, 2026Updated last month
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆54Dec 3, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 4 months ago
- Official repository for the ProteinGym benchmarks☆475Mar 25, 2026Updated 6 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,304Sep 9, 2026Updated last month
- The Family of Diffusion Protein Language Models (DPLM)☆345Jul 25, 2025Updated last year
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆72Aug 13, 2025Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆168Mar 28, 2026Updated 6 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆162Sep 29, 2026Updated last week
- Multiple Protein Structure Alignment at Scale with FoldMason☆283May 11, 2026Updated 5 months ago
- ☆2,986Sep 16, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Feb 10, 2024Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆324Mar 6, 2026Updated 7 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 11 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆278Jul 24, 2025Updated last year
- ☆258Sep 22, 2026Updated 2 weeks ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆74Aug 4, 2026Updated 2 months ago
- ☆157May 18, 2026Updated 4 months ago
- Official Implementation of AMix-1, a Test-Time Scalable Protein Language Model.☆30Dec 10, 2025Updated 10 months ago
- User friendly and accurate binder design pipeline☆1,243Sep 21, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆82Sep 9, 2025Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆56Jun 22, 2026Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆87Oct 24, 2025Updated 11 months ago
- ☆118Jan 3, 2026Updated 9 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,069Sep 21, 2026Updated 3 weeks ago
- Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing☆18Jun 6, 2024Updated 2 years ago
- Official Implementation of IgGM☆233May 28, 2026Updated 4 months ago