🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals. (ACL Demo2025, arXiv 2026)
☆255Sep 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for VenusFactory2
Users that are interested in VenusFactory2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆147Sep 29, 2026Updated 2 weeks ago
- ☆86Aug 26, 2025Updated last year
- Versatile Embedding Network for Understanding protein Sequences☆26May 16, 2025Updated last year
- ☆43Jun 17, 2025Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Sep 29, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆25Apr 10, 2026Updated 6 months ago
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆37May 16, 2025Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆123Nov 18, 2025Updated 11 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆163Sep 29, 2026Updated 2 weeks ago
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)☆219May 15, 2026Updated 5 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆276Sep 9, 2026Updated last month
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- ☆32Aug 12, 2024Updated 2 years ago
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models☆31Oct 8, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆639Mar 8, 2026Updated 7 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆269Nov 5, 2025Updated 11 months ago
- ☆645Feb 6, 2025Updated last year
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 6 months ago
- ☆19May 16, 2025Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆117Apr 15, 2026Updated 6 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆72Aug 13, 2025Updated last year
- Evolla: A frontier protein-language generative model designed to decode the molecular language of proteins.☆73Apr 13, 2026Updated 6 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆349Jul 25, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆26Oct 8, 2024Updated 2 years ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆380Jun 11, 2025Updated last year
- Official repository for the ProteinGym benchmarks☆478Mar 25, 2026Updated 6 months ago
- PPI version of Pythia☆38Jun 13, 2026Updated 4 months ago
- Making Protein Language Modeling Accessible to All Biologists☆169Oct 8, 2026Updated last week
- Inference code for RFdiffusion2☆448Apr 3, 2026Updated 6 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆96Jul 31, 2026Updated 2 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆94Updated this week
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,080Sep 21, 2026Updated 3 weeks ago
- A Unified Evaluation Suite for Protein Design☆141Jan 27, 2026Updated 8 months ago
- A generalized enzyme kinetics parameter prediction model.☆98Oct 2, 2025Updated last year
- Official repository of GENzyme☆66Nov 29, 2024Updated last year
- Supernova's MM-PBSA binding free energy calculation tool.☆14Updated this week
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- ☆118Jan 3, 2026Updated 9 months ago