ProteinDesignLab / calibyLinks
Potts model-based protein sequence design
☆64Updated 2 weeks ago
Alternatives and similar repositories for caliby
Users that are interested in caliby are comparing it to the libraries listed below
Sorting:
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆35Updated 3 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆49Updated 4 months ago
- protein structure generation with sparse all-atom denoising models☆49Updated 2 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- Structure prediction of alternative protein conformations☆80Updated 9 months ago
- Code for the paper "Learning to engineer protein flexibility".☆22Updated last week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 6 months ago
- ☆45Updated last year
- ☆71Updated 8 months ago
- TMol☆47Updated last week
- Modelling protein conformational landscape with Alphafold☆54Updated 3 months ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆53Updated 5 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 7 months ago
- Generative diverse protein backbones by protein language model☆34Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆68Updated 8 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 4 months ago
- Public version for Distance-AF☆28Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆88Updated 5 months ago
- Metrics for our protein design competitions.☆35Updated last year
- Benchmarking code accompanying the release of `bioemu`☆47Updated this week
- A benchmark for 3D biomolecular structure prediction models☆67Updated 6 months ago
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆63Updated last week
- Efficient manipulation of protein structures in Python☆60Updated 2 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated last year
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆58Updated this week
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆58Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago