code for SeqDance/ESMDance, biophysics-informed protein language models
☆58Jan 28, 2026Updated 2 months ago
Alternatives and similar repositories for SeqDance
Users that are interested in SeqDance are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep generative modeling of protein structural ensembles☆37Sep 22, 2025Updated 6 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Benchmarking code accompanying the release of `bioemu`☆57Nov 25, 2025Updated 4 months ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- ☆37Jun 17, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆20Oct 3, 2024Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆58Dec 16, 2025Updated 3 months ago
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆209Mar 5, 2026Updated last month
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆239Nov 5, 2025Updated 5 months ago
- ☆22Dec 15, 2024Updated last year
- Protein function prediction using protein structures and deep graph neural networks.☆20Jan 24, 2025Updated last year
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆53Dec 23, 2025Updated 3 months ago
- MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral ang…☆29Mar 25, 2026Updated 2 weeks ago
- ☆47Mar 7, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Conformational sampling for highly flexible proteins☆15Jan 31, 2025Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Homomer symmetry prediction from protein sequence☆44Mar 13, 2025Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated 10 months ago
- Code for the paper "Learning to engineer protein flexibility".☆23Mar 24, 2026Updated 2 weeks ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Jan 16, 2026Updated 2 months ago
- Generate intrinsically disordered peptide conformations via machine learning☆26May 26, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆75Feb 24, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Long disorder consensus predictor☆22Sep 2, 2025Updated 7 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 6 months ago
- Versatile Embedding Network for Understanding protein Sequences☆25May 16, 2025Updated 10 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆37Jul 22, 2025Updated 8 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆61Feb 3, 2026Updated 2 months ago
- Generative modeling of molecular dynamics trajectories☆206Mar 22, 2026Updated 2 weeks ago
- Files and utilities for protein-emoji☆27Nov 4, 2022Updated 3 years ago
- ☆32Nov 23, 2025Updated 4 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Dec 10, 2024Updated last year
- T-ALPHA: a hierarchical transformer-based deep neural network for protein-ligand binding affinity prediction with uncertainty-aware self-…☆30Feb 24, 2025Updated last year
- ☆18Aug 28, 2023Updated 2 years ago
- ☆52Jan 2, 2025Updated last year
- Clusters protein chains based on CA distance difference☆16Mar 18, 2026Updated 3 weeks ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆125Feb 7, 2026Updated 2 months ago
- Learning the language of protein-protein interactions☆142Jan 12, 2026Updated 2 months ago