ShenLab / SeqDanceLinks
code for SeqDance/ESMDance, biophysics-informed protein language models
☆41Updated 6 months ago
Alternatives and similar repositories for SeqDance
Users that are interested in SeqDance are comparing it to the libraries listed below
Sorting:
- ☆71Updated 7 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆56Updated 5 months ago
- Modelling protein conformational landscape with Alphafold☆53Updated last month
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆76Updated 2 months ago
- ☆44Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Extension of ThermoMPNN for double mutant predictions☆43Updated 2 weeks ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆45Updated 11 months ago
- protein structure generation with sparse all-atom denoising models☆43Updated last month
- ☆62Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆66Updated 3 months ago
- Code for humanization of antibody and nanobody☆58Updated 2 months ago
- Public version for Distance-AF☆28Updated 2 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆82Updated 3 weeks ago
- ☆50Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated this week
- ☆72Updated 4 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 11 months ago
- ☆42Updated 2 months ago
- ☆39Updated last year
- ☆35Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆66Updated 3 months ago
- Baseline model for PPB-Affinity benchmark data☆30Updated 5 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆59Updated last week
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Official repository of GENzyme☆54Updated 11 months ago
- Metrics for our protein design competitions.☆35Updated 11 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- ☆60Updated this week