DeepGraphLearning / SiamDiffLinks
Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
☆42Updated 2 years ago
Alternatives and similar repositories for SiamDiff
Users that are interested in SiamDiff are comparing it to the libraries listed below
Sorting:
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 3 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆60Updated 6 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆47Updated 4 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆44Updated 9 months ago
- Official implementation of "Learning the language of protein structures"☆38Updated 2 months ago
- ☆12Updated 8 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆63Updated 11 months ago
- ☆30Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆77Updated last year
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆26Updated 2 years ago
- ☆21Updated 9 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- Multimodal Pretraining for Unsupervised Protein Representation Learning☆22Updated last year
- ☆76Updated 6 months ago
- A Novel Approach for Protein Sequence Design Based on Secondary Strucure☆22Updated 5 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated last year
- diffusion model for protein sequence generation☆50Updated 2 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- Official repository of ReactZyme☆36Updated 10 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆46Updated 7 months ago