Alternatives and similar repositories for ADFLIP

Users that are interested in ADFLIP are comparing it to the libraries listed below

• LDeng0205 / StaB-ddG
  Predicting mutational effects on protein binding from folding energy. ICML 2025.
  ☆38Updated 5 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆55Updated last month
• KULL-Centre / AF2chi
  ☆19Updated this week
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆53Updated last month
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆35Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆53Updated last month
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆85Updated last year
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆60Updated last month
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 4 months ago
• huhlim / cg2all
  Convert coarse-grained protein structure to all-atom model
  ☆48Updated 7 months ago
• PKUliujl / GeoSeqBuilder
  ☆32Updated 11 months ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆58Updated last year
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆54Updated 7 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆52Updated 3 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆60Updated 8 months ago
• HannesStark / CodonMPNN
  ☆30Updated last year
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆61Updated last month
• KhondamirRustamov / FoldCraft
  Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
  ☆46Updated last month
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated 2 months ago
• sokrypton / af2bind
  ☆54Updated last month
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆50Updated last month
• kiharalab / Distance-AF
  Public version for Distance-AF
  ☆30Updated 5 months ago
• alexechu / protpardelle
  ☆64Updated 2 years ago
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆18Updated 5 months ago
• PKUfjh / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆12Updated 6 months ago
• luo-group / SPURS
  Protein stability prediction using rewired protein generative models
  ☆56Updated 3 weeks ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆60Updated last year