guangyu-zhou / MuPIPR

Related projects ⓘ

Alternatives and complementary repositories for MuPIPR

• muhaochen / seq_ppi
  This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…
  ☆89Updated last year
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆19Updated 6 years ago
• HYsxe / ACME
  Supplementary data for the ACME algorithm
  ☆22Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆104Updated 2 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆40Updated 3 years ago
• tadorfer / nlprot
  NLP for Proteins - A paper collection
  ☆13Updated 4 years ago
• psipred / DeepCov
  Fully convolutional neural networks for protein residue-residue contact prediction
  ☆44Updated 5 years ago
• SimonLarsen / pdb_to_cm
  Compute protein contact map from PDB file.
  ☆10Updated 7 years ago
• JaesikKim / HiG2Vec
  ☆23Updated last year
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆101Updated 4 months ago
• danasilv / Diffuse2Direct
  Orientation of the protein-protein interaction network using network diffusion techniques
  ☆15Updated 3 years ago
• hashemifar / DPPI
  A convolutional neural network to predict PPI interactions
  ☆41Updated 6 years ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆66Updated last week
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆96Updated 3 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆22Updated 8 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆22Updated 10 months ago
• xzenglab / TAGPPI
  ☆19Updated last year
• kiharalab / Emap2sec
  Emap2sec is a computational tool to identify protein secondary structures
  ☆16Updated 3 months ago
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆39Updated last year
• IBM / fold2seq
  Code for Fold2Seq paper from ICML 2021
  ☆49Updated 2 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆58Updated 3 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated 6 months ago
• baranwa2 / Struct2Graph
  A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
  ☆58Updated 3 years ago
• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆33Updated last year
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated last year
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆65Updated 3 months ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated last year
• jhmlam / NucleicNet
  ☆35Updated 2 years ago
• KristinaPreuer / DeepSynergy
  ☆32Updated 6 years ago