guangyu-zhou / MuPIPR
☆22Updated 3 years ago
Alternatives and similar repositories for MuPIPR:
Users that are interested in MuPIPR are comparing it to the libraries listed below
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆92Updated 2 years ago
- PaccMann models for protein language modeling☆41Updated 3 years ago
- Spatiotemporal identification of druggable binding sites using deep learning☆22Updated 3 years ago
- MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…☆11Updated 2 years ago
- ☆19Updated last year
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆25Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 10 months ago
- ☆25Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆12Updated 10 months ago
- An antibody-specific language model focusing on NGL prediction☆23Updated 5 months ago
- ☆68Updated 4 years ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- a python module for generating protein contact maps and distance maps☆46Updated 7 years ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆30Updated last year
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆16Updated 3 years ago
- ☆18Updated 4 years ago
- Paratope Prediction using Deep Learning☆59Updated last year
- ☆77Updated 2 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆32Updated 8 months ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆32Updated 4 years ago
- ☆108Updated 2 years ago
- Multi-Scale Representation Learning on Proteins (NeurIPS 2021)☆46Updated last year
- ☆21Updated 2 years ago
- A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)☆63Updated 2 years ago
- Emap2sec is a computational tool to identify protein secondary structures☆16Updated 5 months ago
- ☆29Updated 4 years ago
- Learning with uncertainty for biological discovery and design☆33Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆59Updated last year
- This repository contains the stand-alone tool for MusiteDeep server☆29Updated 4 years ago