Deep generative modeling of protein structural ensembles
☆37May 27, 2026Updated 2 weeks ago
Alternatives and similar repositories for sam2
Users that are interested in sam2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Updated this week
- ☆17Aug 20, 2024Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆60Jan 28, 2026Updated 4 months ago
- The LoCoHD metric for protein-protein structure comparison☆15Oct 1, 2025Updated 8 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆39Jul 22, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆53Mar 25, 2026Updated 2 months ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 3 months ago
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated last year
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 2 months ago
- ☆15Jan 31, 2026Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated last year
- mdml: Deep Learning for Molecular Simulations☆55May 17, 2025Updated last year
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- MAGPIE☆17May 5, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated last year
- Generative modeling of molecular dynamics trajectories☆219Mar 22, 2026Updated 2 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 7 months ago
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆40Apr 1, 2026Updated 2 months ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- A flow matching model for generating conformational ensembles of protein backbones.☆45May 22, 2026Updated 3 weeks ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆140Nov 11, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 2 months ago
- Tutorials and additional documentation for the WESTPA suite☆16Oct 20, 2025Updated 7 months ago
- ☆50Updated this week
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆85Sep 12, 2024Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆61Dec 16, 2025Updated 5 months ago
- Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…☆18Nov 14, 2023Updated 2 years ago
- Versatile Embedding Network for Understanding protein Sequences☆25May 16, 2025Updated last year
- ☆40Jun 17, 2025Updated 11 months ago
- Generate intrinsically disordered peptide conformations via machine learning☆25May 26, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆192Jun 24, 2024Updated last year
- A fine-tuned version of ProteinMPNN for generating stable cyclic peptide sequences☆42Feb 2, 2026Updated 4 months ago
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 11 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆127Jan 28, 2026Updated 4 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆66Jun 4, 2026Updated last week
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 2 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago