maovshao / PLMSearchLinks
PLMSearch enables accurate and fast homologous protein search with only sequences as input
☆77Updated 4 months ago
Alternatives and similar repositories for PLMSearch
Users that are interested in PLMSearch are comparing it to the libraries listed below
Sorting:
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- A domain parser for Alphafold models☆46Updated 2 years ago
- ColabFold protocol☆56Updated last year
- Fast protein structure searching or your money back☆118Updated 2 weeks ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆91Updated last year
- ☆76Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Updated 5 months ago
- ☆77Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 5 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆112Updated last week
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 4 months ago
- ☆47Updated last year
- ☆32Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 10 months ago
- MMseqs2 app to run on your workstation or servers☆103Updated last week
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- Evolutionary velocity with protein language models☆95Updated last month
- A tool for protein and protein complex structure prediction.☆29Updated 7 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆207Updated 3 months ago
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- Learning the language of protein-protein interactions☆124Updated 2 weeks ago
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 9 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 9 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆170Updated 9 months ago
- ☆56Updated 5 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated 3 weeks ago
- ☆87Updated 2 months ago