maovshao / PLMSearch
PLMSearch enables accurate and fast homologous protein search with only sequences as input
☆62Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for PLMSearch
- A domain parser for Alphafold models☆32Updated 11 months ago
- ☆63Updated last month
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆109Updated last week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆78Updated 7 months ago
- Detection of remote homology by comparison of protein language model representations☆44Updated this week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- Protein folding in Pymol☆95Updated 3 months ago
- Fast protein structure searching or your money back☆81Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆30Updated 8 months ago
- ☆45Updated 5 months ago
- ☆25Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆48Updated 3 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆85Updated 2 months ago
- ColabFold protocol☆44Updated last month
- ☆70Updated 6 months ago
- Geometric deep learning of protein–DNA binding specificity☆49Updated last month
- ☆21Updated 5 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- ☆29Updated 11 months ago
- ☆82Updated 4 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆51Updated this week
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆34Updated this week
- SaprotHub: Making Protein Modeling Accessible to All Biologists☆69Updated this week
- Deep learning prediction of enzyme optimum pH☆23Updated 11 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆18Updated 3 months ago
- ☆53Updated last month
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆36Updated 2 months ago
- Parametric Building of de novo Functional Topologies☆44Updated 2 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆41Updated 5 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆134Updated last week