maovshao / PLMSearchLinks
PLMSearch enables accurate and fast homologous protein search with only sequences as input
☆78Updated 5 months ago
Alternatives and similar repositories for PLMSearch
Users that are interested in PLMSearch are comparing it to the libraries listed below
Sorting:
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Fast protein structure searching or your money back☆118Updated 3 weeks ago
- ☆79Updated last year
- ColabFold protocol☆56Updated last year
- ☆76Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Updated 5 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆113Updated last week
- GTalign, high-performance protein structure alignment, superposition and search☆54Updated 5 months ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- A tool for protein and protein complex structure prediction.☆29Updated 7 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- ☆47Updated last year
- MMseqs2 app to run on your workstation or servers☆105Updated this week
- Geometric deep learning of protein–DNA binding specificity☆76Updated 10 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 9 months ago
- ☆33Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- ☆56Updated 5 months ago
- Learning the language of protein-protein interactions☆131Updated 3 weeks ago
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- Evolutionary velocity with protein language models☆97Updated 2 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Updated last week
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆239Updated last week
- ☆63Updated 2 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- ☆23Updated 2 months ago