maovshao / PLMSearchLinks
PLMSearch enables accurate and fast homologous protein search with only sequences as input
☆75Updated 2 months ago
Alternatives and similar repositories for PLMSearch
Users that are interested in PLMSearch are comparing it to the libraries listed below
Sorting:
- Fast protein structure searching or your money back☆115Updated last month
- Detection of remote homology by comparison of protein language model representations☆56Updated 11 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆75Updated 2 months ago
- ColabFold protocol☆57Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 2 months ago
- ☆74Updated last year
- A domain parser for Alphafold models☆42Updated last year
- ☆73Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆95Updated last week
- Multiple Protein Structure Alignment at Scale with FoldMason☆196Updated last month
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆41Updated 3 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆51Updated 3 months ago
- ☆44Updated last year
- Neural Networks for Protein Sequence Alignment☆131Updated last year
- MMseqs2 app to run on your workstation or servers☆97Updated 2 weeks ago
- ☆31Updated last year
- A tool for protein and protein complex structure prediction.☆29Updated 5 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 7 months ago
- Learning the language of protein-protein interactions☆103Updated last month
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆55Updated 6 months ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆105Updated 2 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 7 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 4 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆166Updated 6 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆108Updated last month
- ☆31Updated 3 years ago