lujiarui / Str2StrLinks
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
☆78Updated last year
Alternatives and similar repositories for Str2Str
Users that are interested in Str2Str are comparing it to the libraries listed below
Sorting:
- ☆65Updated 2 years ago
- ☆94Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆82Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆49Updated 11 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated 2 weeks ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆122Updated 4 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- Aligning protein generative models with experimental fitness☆108Updated last week
- A benchmark for 3D biomolecular structure prediction models☆66Updated 5 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆69Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆74Updated 2 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆68Updated 3 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆121Updated 4 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆45Updated 10 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆89Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- ☆42Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆50Updated 4 months ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 5 months ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆90Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated last month
- Implementation of AlphaFold 3 in PyTorch Lightning + Hydra☆34Updated last year
- ☆107Updated 2 years ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆33Updated 2 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆114Updated 5 months ago