lujiarui / Str2StrLinks
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
☆78Updated last year
Alternatives and similar repositories for Str2Str
Users that are interested in Str2Str are comparing it to the libraries listed below
Sorting:
- ☆65Updated last year
- ☆90Updated 8 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆107Updated 3 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆78Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 5 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated last month
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆96Updated 10 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆43Updated 7 months ago
- A benchmark for 3D biomolecular structure prediction models☆60Updated last month
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆55Updated 3 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- ☆152Updated 2 weeks ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆97Updated 3 weeks ago
- ☆44Updated 3 weeks ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆125Updated 7 months ago
- ☆95Updated 3 weeks ago
- Aligning protein generative models with experimental fitness☆99Updated last month
- Official repository of GENzyme☆51Updated 6 months ago
- Dataset and package for working with protein-protein interactions in 3D☆92Updated last month
- Official repository of EnzymeFlow☆91Updated 6 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated last year
- ☆108Updated 2 years ago
- ☆106Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆61Updated last month
- Code for humanization of antibody and nanobody☆42Updated 6 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆110Updated 4 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆94Updated last week
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆87Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆58Updated last year