Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
☆88Apr 21, 2026Updated 3 months ago
Alternatives and similar repositories for Str2Str
Users that are interested in Str2Str are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆536Mar 22, 2026Updated 3 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆85May 27, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆275Apr 27, 2025Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆203Sep 18, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆236Aug 27, 2025Updated 10 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆293Dec 10, 2024Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆99Aug 29, 2023Updated 2 years ago
- This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…☆69May 22, 2024Updated 2 years ago
- ☆72Feb 13, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆119Dec 7, 2022Updated 3 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- Database of Interacting Protein Structures (DIPS)☆106Jan 26, 2024Updated 2 years ago
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 3 years ago
- Diffusion model based protein-ligand flexible docking method☆118Oct 30, 2024Updated last year
- ☆32Feb 5, 2025Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆50Feb 24, 2026Updated 4 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆48Mar 7, 2026Updated 4 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆333Oct 6, 2025Updated 9 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆613Mar 8, 2026Updated 4 months ago
- AI-powered ab initio biomolecular dynamics simulation☆574Feb 18, 2025Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- A generative model for programmable protein design☆824Apr 11, 2024Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆564Dec 12, 2023Updated 2 years ago
- ☆100Oct 15, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆258Mar 26, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Protein design and variant prediction using autoregressive generative models☆122Jan 23, 2024Updated 2 years ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆96Dec 29, 2023Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆279Feb 14, 2024Updated 2 years ago
- ☆10Jun 28, 2025Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆339Jul 25, 2025Updated 11 months ago
- ☆118Jan 3, 2026Updated 6 months ago
- Public Release of ProGen3 family of Models☆113Jul 21, 2025Updated last year