Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
☆81Mar 7, 2024Updated 2 years ago
Alternatives and similar repositories for Str2Str
Users that are interested in Str2Str are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆520Mar 22, 2026Updated 2 weeks ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆75Feb 24, 2025Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆418Jul 3, 2023Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆268Apr 27, 2025Updated 11 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆202Sep 18, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆281Dec 10, 2024Updated last year
- This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…☆67May 22, 2024Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- ☆118Dec 7, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- ☆70Feb 13, 2026Updated last month
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- Implementation of methods to sample from Boltzmann distributions☆21Jan 24, 2023Updated 3 years ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- ☆47Mar 7, 2026Updated last month
- Diffusion model based protein-ligand flexible docking method☆118Oct 30, 2024Updated last year
- ☆18Feb 25, 2026Updated last month
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆328Oct 6, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- A generative model for programmable protein design☆809Apr 11, 2024Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆47Feb 24, 2026Updated last month
- Diffusion models of protein structure; trigonometry and attention are all you need!☆566Dec 12, 2023Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆120Jan 23, 2024Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆275Feb 14, 2024Updated 2 years ago
- ☆97Oct 15, 2024Updated last year
- AI-powered ab initio biomolecular dynamics simulation☆571Feb 18, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆92Dec 29, 2023Updated 2 years ago
- ☆117Jan 3, 2026Updated 3 months ago
- The OpenMM Cookbook and Tutorials☆56Feb 11, 2026Updated last month
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- ☆221Mar 2, 2024Updated 2 years ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆171Nov 25, 2022Updated 3 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆581Mar 8, 2026Updated last month