aforr / LineageOTLinks
☆13Updated 2 years ago
Alternatives and similar repositories for LineageOT
Users that are interested in LineageOT are comparing it to the libraries listed below
Sorting:
- ☆11Updated 4 years ago
- Code for scKINETICS (ISMB 2023)☆22Updated 2 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Updated 5 years ago
- Population balance analysis☆44Updated 6 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆95Updated this week
- ☆18Updated last year
- A python package for chromVAR☆31Updated 2 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆45Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- Single-cell copy number calling and event history reconstruction.☆27Updated 10 months ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Single-cell Iso Prep☆17Updated 2 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 5 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 4 months ago
- Pipeline for designing custom probes against human genes☆18Updated 11 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆10Updated 2 years ago
- ☆36Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆31Updated 3 weeks ago
- Regulatory networks with Direct Information☆17Updated 6 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆12Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆52Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆22Updated 7 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆33Updated 7 months ago
- scVI extension for unspliced RNA☆16Updated 5 months ago