aforr / LineageOT

Related projects ⓘ

Alternatives and complementary repositories for LineageOT

• jessica1338 / LinTIMaT
  Lineage Tracing by Integrating Mutation and Transcriptomic data
  ☆12Updated 4 years ago
• matsengrp / gapml
  ☆11Updated 3 years ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆20Updated last year
• landau-lab / PATH
  ☆15Updated 3 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆17Updated 10 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 3 months ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 5 years ago
• soedinglab / prosstt
  PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
  ☆25Updated 10 months ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago
• cbg-ethz / scIsoPrep
  Single-cell Iso Prep
  ☆12Updated last year
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆10Updated 3 years ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 3 weeks ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• songlab-cal / scquint
  ☆15Updated 5 months ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆21Updated 2 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆23Updated 3 years ago
• soedinglab / merlot
  Reconstruct the lineage topology of a scRNA-seq differentiation dataset.
  ☆18Updated 4 years ago
• mckennalab / SingleCellLineage
  Updated scripts and pipelines for processing GESTALT data at single-cell resolution
  ☆19Updated 3 years ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆23Updated last month
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆29Updated 2 years ago
• AllonKleinLab / paper-data
  ☆18Updated 2 months ago
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 7 months ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆17Updated last week
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆45Updated last month
• jacobhepkema / scover
  scover
  ☆22Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 4 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆18Updated 4 years ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated last year