aforr / LineageOTLinks
☆13Updated 2 years ago
Alternatives and similar repositories for LineageOT
Users that are interested in LineageOT are comparing it to the libraries listed below
Sorting:
- ☆11Updated 4 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Updated 5 years ago
- Population balance analysis☆44Updated 6 years ago
- Code for scKINETICS (ISMB 2023)☆22Updated last year
- ☆18Updated last year
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆45Updated 5 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆94Updated this week
- A python package for chromVAR☆30Updated 2 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆22Updated 7 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 3 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆10Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated last week
- Single-cell Iso Prep☆17Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆21Updated last year
- scVI extension for unspliced RNA☆16Updated 4 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆12Updated 2 years ago
- ☆32Updated 7 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ☆36Updated last year
- Toolkit for single-cell DNA methylation analysis.☆42Updated last week
- ☆10Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated last week
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago