aforr / LineageOTLinks
☆13Updated 2 years ago
Alternatives and similar repositories for LineageOT
Users that are interested in LineageOT are comparing it to the libraries listed below
Sorting:
- ☆11Updated 4 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Updated 5 years ago
- Code for scKINETICS (ISMB 2023)☆22Updated 2 years ago
- Population balance analysis☆44Updated 6 years ago
- ☆19Updated last year
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆97Updated 2 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- A python package for chromVAR☆33Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated last week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆23Updated 8 years ago
- ☆10Updated 3 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆46Updated 6 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- Regulatory networks with Direct Information☆17Updated 6 years ago
- ☆37Updated last year
- Single-cell Iso Prep☆17Updated 2 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Updated 5 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- Benchmark of GRNs using the GRETA pipeline☆31Updated this week
- scVI extension for unspliced RNA☆16Updated 8 months ago
- Pipeline for designing custom probes against human genes☆20Updated last week
- ☆10Updated 3 years ago
- ☆69Updated 2 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Toolkit for single-cell DNA methylation analysis.☆46Updated 2 weeks ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆28Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 3 years ago