josephreplogle / guide_callingLinks
Tools for sgRNA calling in direct capture Perturb-seq data
☆39Updated 2 years ago
Alternatives and similar repositories for guide_calling
Users that are interested in guide_calling are comparing it to the libraries listed below
Sorting:
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Benchmark of GRNs using the GRETA pipeline☆30Updated this week
- ☆35Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated 2 weeks ago
- ☆37Updated 9 months ago
- ☆37Updated last year
- Single cell omics biology annotations☆51Updated 8 months ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Updated 6 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Pipeline to run scE2G☆32Updated 2 months ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 8 months ago
- A python package for chromVAR☆32Updated 2 years ago
- ☆56Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆26Updated 8 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- ☆69Updated last month