josephreplogle / guide_callingLinks
Tools for sgRNA calling in direct capture Perturb-seq data
☆41Updated 2 years ago
Alternatives and similar repositories for guide_calling
Users that are interested in guide_calling are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ACTIONet single-cell analysis framework☆44Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- Benchmark of GRNs using the GRETA pipeline☆31Updated last week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- ☆27Updated 9 months ago
- ☆36Updated 10 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- A python package for chromVAR☆33Updated 2 years ago
- Single cell omics biology annotations☆53Updated 9 months ago
- cTPnet Package☆27Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated last week
- ☆56Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- ☆37Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- Pipeline to run scE2G☆32Updated this week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Updated 6 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆46Updated 6 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆33Updated 3 years ago