Tools for sgRNA calling in direct capture Perturb-seq data
☆41Jun 18, 2023Updated 2 years ago
Alternatives and similar repositories for guide_calling
Users that are interested in guide_calling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆69Jun 6, 2020Updated 6 years ago
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 6 years ago
- ☆17Jun 2, 2022Updated 4 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- ☆40Feb 24, 2026Updated 3 months ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- ☆69Jul 21, 2023Updated 2 years ago
- ☆14Dec 21, 2022Updated 3 years ago
- ☆98Aug 12, 2024Updated last year
- ☆28Mar 12, 2026Updated 2 months ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jun 2, 2026Updated last week
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆13Oct 11, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆15Oct 20, 2023Updated 2 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆44May 25, 2024Updated 2 years ago
- ☆19May 29, 2026Updated last week
- Single-cell perturbation analysis☆322Jun 3, 2026Updated last week
- scID☆14Oct 21, 2021Updated 4 years ago
- The R Bioconductor package for scMAGeCK.☆13May 25, 2026Updated 2 weeks ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆37Feb 20, 2026Updated 3 months ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Jul 31, 2019Updated 6 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆17Sep 10, 2024Updated last year
- ☆17Apr 9, 2021Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆38Updated this week
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- ☆27Apr 18, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- ☆15Jul 8, 2022Updated 3 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆501Apr 23, 2026Updated last month