Tools for sgRNA calling in direct capture Perturb-seq data
☆42Jun 18, 2023Updated 3 years ago
Alternatives and similar repositories for guide_calling
Users that are interested in guide_calling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆71Jun 6, 2020Updated 6 years ago
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 7 years ago
- ☆19May 29, 2026Updated 3 months ago
- ☆18Jun 2, 2022Updated 4 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A benchmark on predicting how small molecules change gene expression in different cell types.☆18Jul 4, 2025Updated last year
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 4 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- ☆16Dec 21, 2022Updated 3 years ago
- ☆40Feb 24, 2026Updated 6 months ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- ☆71Jul 21, 2023Updated 3 years ago
- ☆101Aug 12, 2024Updated 2 years ago
- ☆39Jun 8, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Jul 31, 2026Updated 3 weeks ago
- ☆28Mar 12, 2026Updated 5 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆16Oct 20, 2023Updated 2 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆46May 25, 2024Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆40Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Single-cell perturbation analysis☆337Updated this week
- The R Bioconductor package for scMAGeCK.☆13Jul 10, 2026Updated last month
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆14Oct 11, 2021Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆41Jan 14, 2025Updated last year
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆98Jul 31, 2019Updated 7 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated last month
- ☆16Apr 9, 2021Updated 5 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆13Feb 21, 2023Updated 3 years ago
- ☆15Jul 8, 2022Updated 4 years ago