Alternatives and similar repositories for moscot:

Users that are interested in moscot are comparing it to the libraries listed below

• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆163Updated this week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆54Updated this week
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆150Updated 2 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆114Updated 3 weeks ago
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated 3 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆109Updated 4 months ago
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆107Updated last year
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆96Updated last week
• dpeerlab / spectra
  Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
  ☆164Updated 7 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆67Updated 2 years ago
• klarman-cell-observatory / scPhere
  ☆98Updated last year
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆181Updated last month
• saezlab / decoupler-py
  Python package to perform enrichment analysis from omics data.
  ☆183Updated last month
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆142Updated 3 months ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆52Updated this week
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆126Updated 4 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆103Updated 5 months ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆59Updated 10 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆106Updated 5 months ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆15Updated 6 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆156Updated 8 months ago
• theislab / prophet
  ☆29Updated this week
• rajewsky-lab / novosparc
  ☆127Updated last year
• lilab-bcb / harmony-pytorch
  ☆51Updated this week
• adamgayoso / mplscience
  Matplotlib style for scientific publications
  ☆13Updated 2 weeks ago
• Genentech / sVAE
  ☆58Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆109Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago