Multi-omic single-cell optimal transport tools
☆214Jun 29, 2026Updated this week
Alternatives and similar repositories for moscot
Users that are interested in moscot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ☆14Jul 28, 2023Updated 2 years ago
- trajectory inference☆109Jan 27, 2025Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆180Jun 16, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Feature selection for preserving biological trajectories in single-cell data☆22Jun 24, 2026Updated last week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆70Apr 24, 2026Updated 2 months ago
- Single-cell perturbation analysis☆334Updated this week
- ☆12May 29, 2024Updated 2 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated last week
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- ☆67Sep 13, 2024Updated last year
- Automatically annotate cell types, consistently across samples.☆24Jun 22, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆29Oct 21, 2025Updated 8 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jun 22, 2026Updated last week
- ☆16Sep 1, 2023Updated 2 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆503Updated this week
- Spatial Single Cell Analysis in Python☆580Updated this week
- Conversion between scRNA-seq objects☆210May 5, 2026Updated last month
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆378Jun 26, 2026Updated last week
- Camiel's scATAC-seq analysis pipeline☆14Apr 15, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data analysis for the moscot-framework project☆25Feb 27, 2026Updated 4 months ago
- RNA Velocity generalized through dynamical modeling☆506Feb 25, 2026Updated 4 months ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆26May 26, 2026Updated last month
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆122Sep 29, 2025Updated 9 months ago
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 4 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Jun 22, 2026Updated last week
- Non-parametric density inference for single-cell analysis.☆75Apr 10, 2026Updated 2 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆199Jan 30, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,649Jun 25, 2026Updated last week
- Convert between AnnData and SingleCellExperiment☆151Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆301Updated this week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆149Feb 20, 2025Updated last year
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆81Jan 25, 2024Updated 2 years ago
- ☆31Aug 29, 2025Updated 10 months ago