Alternatives and similar repositories for moscot

Users that are interested in moscot are comparing it to the libraries listed below

• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆185Updated last week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆62Updated last week
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆112Updated last year
• dpeerlab / spectra
  Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
  ☆171Updated 11 months ago
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆212Updated last week
• nitzanlab / biolord
  ☆80Updated 11 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆104Updated last week
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated last month
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆17Updated 3 weeks ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆153Updated 2 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆129Updated 4 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆99Updated last month
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆201Updated 3 weeks ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆90Updated 2 weeks ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆53Updated last week
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 8 months ago
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆221Updated last year
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆88Updated 4 months ago
• saezlab / liana-py
  LIANA+: an all-in-one framework for cell-cell communication
  ☆219Updated last week
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆144Updated 7 months ago
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆97Updated 5 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆165Updated last year
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆36Updated this week
• klarman-cell-observatory / scPhere
  ☆100Updated 2 years ago
• adamgayoso / mplscience
  Matplotlib style for scientific publications
  ☆14Updated 3 weeks ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆44Updated last week
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆81Updated last week
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆72Updated 5 months ago
• scverse / muon
  muon is a multimodal omics Python framework
  ☆239Updated 4 months ago