theislab / moscotLinks
Multi-omic single-cell optimal transport tools
☆186Updated last week
Alternatives and similar repositories for moscot
Users that are interested in moscot are comparing it to the libraries listed below
Sorting:
- Single-cell perturbation analysis☆283Updated this week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆85Updated last week
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆188Updated last week
- Learning cell communication from spatial graphs of cells☆114Updated 2 years ago
- ☆90Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆165Updated 11 months ago
- Models and datasets for perturbational single-cell omics☆171Updated 3 years ago
- Python package to perform enrichment analysis from omics data.☆253Updated this week
- CZ CELLxGENE Discover Census☆117Updated 3 weeks ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆59Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 7 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆233Updated last month
- Multimodal Data (.h5mu) implementation for Python☆107Updated this week
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆248Updated last week
- LIANA+: an all-in-one framework for cell-cell communication☆265Updated 2 weeks ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆149Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆113Updated 4 months ago
- single cell foundation model for Gene network inference and more☆19Updated 2 months ago
- End-to-end analysis of spatial multi-omics data☆102Updated last week
- Multi-omic velocity inference☆116Updated last year
- muon is a multimodal omics Python framework☆262Updated 2 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 6 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆157Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆149Updated 2 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆178Updated 10 months ago
- ☆38Updated last month
- Python implementation of the Slingshot pseudotime algorithm☆69Updated 3 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆149Updated 3 years ago
- ☆155Updated last year