Multi-omic single-cell optimal transport tools
☆216Sep 21, 2026Updated this week
Alternatives and similar repositories for moscot
Users that are interested in moscot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell perturbation analysis☆346Updated this week
- CellRank: dynamics from multi-view single-cell data☆456Sep 16, 2026Updated last week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆29Jan 3, 2025Updated last year
- Single-cell differential expression☆19Apr 23, 2026Updated 5 months ago
- Modeling complex perturbations with CellFlow☆159Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- inferring regulatory cellular dynamics☆191Sep 11, 2026Updated last week
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆197Aug 31, 2026Updated 3 weeks ago
- trajectory inference☆109Jan 27, 2025Updated last year
- Data analysis for the moscot-framework project☆25Feb 27, 2026Updated 6 months ago
- ☆14Jul 28, 2023Updated 3 years ago
- Reference mapping for single-cell genomics☆411Jun 26, 2026Updated 2 months ago
- Python package to perform enrichment analysis from omics data.☆294Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LIANA+: an all-in-one framework for cell-cell communication☆318Updated this week
- Automatically annotate cell types, consistently across samples.☆29Updated this week
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated 2 months ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆13Mar 8, 2025Updated last year
- Feature selection for preserving biological trajectories in single-cell data☆21Jun 24, 2026Updated 2 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆70Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆32Oct 21, 2025Updated 11 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆182Oct 31, 2024Updated last year
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 4 months ago
- ☆68Sep 13, 2024Updated 2 years ago
- Toolbox for single-cell data analysis on sample level☆28Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆92Mar 20, 2025Updated last year
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆396Updated this week
- Spatial Single Cell Analysis in Python☆598Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆72Jul 9, 2026Updated 2 months ago
- ☆49Jan 28, 2026Updated 7 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆203Jan 30, 2026Updated 7 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆510Jul 26, 2026Updated last month
- ☆13May 29, 2024Updated 2 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated 2 months ago
- physics-informed neural network based method for solving single-cell population dynamics☆17Updated this week