Alternatives and similar repositories for SERGIO

Users that are interested in SERGIO are comparing it to the libraries listed below

• Genentech / sVAE
  ☆63Updated 2 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆36Updated last month
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆19Updated 7 months ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆78Updated last year
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• HantaoShu / DeepSEM
  ☆87Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆171Updated 3 years ago
• YosefLab / SymSim
  ☆26Updated last year
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆61Updated last year
• nitzanlab / biolord
  ☆88Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago
• broadinstitute / wot
  A software package for analyzing snapshots of developmental processes
  ☆151Updated 3 years ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆56Updated 7 years ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆24Updated 5 months ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆76Updated 3 months ago
• vandijklab / CINEMA-OT
  ☆34Updated 8 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆57Updated this week
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 9 months ago
• zcang / SpaOTsc
  ☆45Updated 5 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• altoslabs / perturbench
  ☆69Updated 2 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆67Updated 5 months ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆114Updated last year
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆65Updated 5 years ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆124Updated last year
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆66Updated last year
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆51Updated 11 months ago