PayamDiba / SERGIOLinks
A simulator for single-cell expression data guided by gene regulatory networks
☆69Updated last year
Alternatives and similar repositories for SERGIO
Users that are interested in SERGIO are comparing it to the libraries listed below
Sorting:
- ☆63Updated 2 years ago
- Git Repo for simulating Boolean Models☆36Updated last week
- Simulating single-cell data using gene regulatory networks 📠☆77Updated last year
- spatial transcriptome, single cell☆71Updated 2 years ago
- ☆101Updated 2 years ago
- Functional and Learnable Cell dynamicS☆19Updated 6 months ago
- Conditional out-of-distribution prediction☆62Updated last year
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- A software package for analyzing snapshots of developmental processes☆149Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Models and datasets for perturbational single-cell omics☆167Updated 3 years ago
- ☆26Updated last year
- Diffusion model for gene regulatory network inference.☆23Updated 3 months ago
- ☆56Updated last month
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 10 months ago
- ☆85Updated 2 years ago
- ☆86Updated last year
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Updated last month
- ☆45Updated 3 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆118Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆68Updated 2 years ago
- ☆58Updated 3 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated last year
- Global Waddington-OT☆23Updated 7 months ago
- ☆34Updated 6 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆48Updated 6 years ago
- Multi-omic velocity inference☆112Updated last year