PayamDiba / SERGIOLinks
A simulator for single-cell expression data guided by gene regulatory networks
☆70Updated last year
Alternatives and similar repositories for SERGIO
Users that are interested in SERGIO are comparing it to the libraries listed below
Sorting:
- Git Repo for simulating Boolean Models☆36Updated last month
- ☆63Updated 2 years ago
- Functional and Learnable Cell dynamicS☆19Updated 7 months ago
- Simulating single-cell data using gene regulatory networks 📠☆78Updated last year
- ☆34Updated 8 months ago
- ☆69Updated 2 months ago
- ☆87Updated 2 years ago
- ☆26Updated last year
- ☆101Updated 2 years ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- ☆88Updated last year
- Diffusion model for gene regulatory network inference.☆24Updated 5 months ago
- Models and datasets for perturbational single-cell omics☆170Updated 3 years ago
- A software package for analyzing snapshots of developmental processes☆151Updated 3 years ago
- ☆48Updated 6 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 11 months ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- ☆45Updated 5 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆65Updated last year
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 7 years ago
- Python client for the OmniPath web service☆55Updated 6 months ago
- Global Waddington-OT☆23Updated 9 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆56Updated last week
- Simple scVI implementation☆12Updated 2 weeks ago
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆32Updated 9 months ago