rsinghlab / SCOT
Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
☆70Updated last year
Alternatives and similar repositories for SCOT:
Users that are interested in SCOT are comparing it to the libraries listed below
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 4 years ago
- ☆60Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆61Updated 11 months ago
- Git Repo for simulating Boolean Models☆34Updated 10 months ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 6 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆11Updated last month
- ☆99Updated 2 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆129Updated 5 months ago
- ☆17Updated 3 years ago
- Archetypal Analysis network (AAnet)☆33Updated 2 months ago
- ☆23Updated 3 months ago
- ☆45Updated 2 years ago
- ☆29Updated 3 years ago
- Conditional out-of-distribution prediction☆59Updated 8 months ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 4 years ago
- a unified single-cell data integration framework by optimal transport☆35Updated 6 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆99Updated 8 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Deep joint-leaning single-cell multi-omics model☆16Updated 2 years ago
- ☆55Updated 2 years ago
- ☆40Updated 5 months ago
- Hypergraph Factorisation☆23Updated 4 months ago
- A software package for analyzing snapshots of developmental processes☆145Updated 2 years ago
- Models and datasets for perturbational single-cell omics☆154Updated 2 years ago
- Simulating single-cell data using gene regulatory networks 📠☆73Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆74Updated 3 months ago
- Single cell joint embedding and modality prediction with autoencoder☆9Updated 2 years ago
- ☆54Updated last year