Alternatives and similar repositories for MuTrans-release:

Users that are interested in MuTrans-release are comparing it to the libraries listed below

• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 3 months ago
• SunXQlab / ESICCC
  ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
  ☆12Updated last year
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆11Updated 8 months ago
• wanglab-broad / CAST
  CAST package
  ☆29Updated 3 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆14Updated 2 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆24Updated 2 years ago
• AllonKleinLab / paper-data
  ☆19Updated last month
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 3 months ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 4 months ago
• zsteve / gWOT
  Global Waddington-OT
  ☆21Updated 6 months ago
• PeterZZQ / CellPath
  ☆20Updated 2 years ago
• federicobocci / spliceJAC
  ☆10Updated 2 years ago
• sqjin / scEpath
  An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
  ☆16Updated 3 years ago
• xinhe-lab / GSFA
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …
  ☆18Updated last year
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆20Updated 8 months ago
• liuqivandy / SpaGene
  ☆18Updated last year
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆44Updated 3 weeks ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 3 weeks ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated this week
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• msraredon / Connectome
  ☆28Updated 2 years ago
• ucsd-ccbb / NetColoc
  development of network co-localization tool
  ☆14Updated 3 months ago
• ykat0 / capital
  ☆18Updated last year
• pqiu / cooccurrence_clustering
  ☆13Updated 4 years ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆30Updated last week