yachielab / FRACTALLinks
FRACTAL: framework for distributed computing to trace large accurate lineages
☆24Updated 3 years ago
Alternatives and similar repositories for FRACTAL
Users that are interested in FRACTAL are comparing it to the libraries listed below
Sorting:
- new repo☆28Updated 4 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 5 years ago
- ☆35Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- ☆38Updated 2 years ago
- Digenome-toolkit ver2.☆16Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Improving gene isoform quantification with miniQuant☆32Updated 3 weeks ago
- Processing and plotting tools for genomics data☆22Updated last week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- ☆38Updated last year
- processing 10x genomics reads☆27Updated 6 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 6 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- ☆27Updated 5 months ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 5 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- ☆23Updated 8 months ago