yachielab / FRACTALLinks
FRACTAL: framework for distributed computing to trace large accurate lineages
☆24Updated 2 years ago
Alternatives and similar repositories for FRACTAL
Users that are interested in FRACTAL are comparing it to the libraries listed below
Sorting:
- new repo☆28Updated 4 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Metagenomics microbial abundance quantification☆28Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- ☆15Updated 2 years ago
- Long-read splice alignment with high accuracy☆63Updated 9 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆42Updated 2 weeks ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- ☆67Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 11 months ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 2 weeks ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated this week