FRACTAL: framework for distributed computing to trace large accurate lineages
☆24Sep 6, 2022Updated 4 years ago
Alternatives and similar repositories for FRACTAL
Users that are interested in FRACTAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Jul 22, 2026Updated 2 months ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated last year
- ☆15Feb 6, 2023Updated 3 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- ☆14Jul 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Definition of link data for TogoID☆15Oct 3, 2026Updated last week
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17May 22, 2024Updated 2 years ago
- ☆16Jun 22, 2022Updated 4 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 4 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- ☆48Oct 2, 2023Updated 3 years ago
- ☆10May 31, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmark empirical datasets for phylogenetic method development☆20Dec 5, 2023Updated 2 years ago
- On the fly conversion of Python docstrings to markdown☆31Jun 20, 2025Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- ☆14Sep 2, 2026Updated last month
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- A python package for showing JBrowse views☆27Jul 22, 2026Updated 2 months ago
- 3D geoms for plotnine (grammar of graphics in Python)☆13Aug 5, 2022Updated 4 years ago
- ☆11Feb 11, 2021Updated 5 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆100Jul 23, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Estimating time trees from very large phylogenies☆27Sep 8, 2026Updated last month
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 months ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 5 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- ☆29Dec 25, 2023Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- annotation base on snakemake☆12May 29, 2024Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Color DNA/RNA bases in terminal output☆22Aug 29, 2017Updated 9 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago