Alternatives and similar repositories for FRACTAL

Users that are interested in FRACTAL are comparing it to the libraries listed below

• ISUgenomics / SequelTools
  new repo
  ☆28Updated 4 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆63Updated last year
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• srbehera / DRAGEN_Analysis
  ☆35Updated last year
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated last month
• nanoporetech / Pore-C-Snakemake
  ☆34Updated 2 years ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆66Updated 2 weeks ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 6 months ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated 4 months ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated last year
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆57Updated 3 weeks ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated this week
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated 10 months ago
• yachielab / SPADE
  ☆15Updated 2 years ago
• LappalainenLab / lorals
  ☆37Updated 2 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆38Updated 2 years ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last week
• WGLab / LongReadSum
  ☆24Updated 2 weeks ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆29Updated last week
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆23Updated 2 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• vpc-ccg / freddie
  Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
  ☆16Updated 2 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 9 months ago