caleblareau / mtscATACpaper_reproducibility
Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020
☆15Updated last year
Related projects: ⓘ
- Functional Inference of Gene Regulation☆33Updated 2 months ago
- ☆35Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆39Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last year
- SCDC☆42Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆12Updated last year
- ☆31Updated 2 weeks ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆11Updated 4 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆22Updated 3 months ago
- ☆10Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 8 months ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated 3 weeks ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆33Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆18Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- ☆16Updated 2 weeks ago
- ☆39Updated 3 years ago
- Functions for single cell data analysis☆22Updated 3 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆37Updated 4 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆11Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated 2 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆24Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated last month
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆12Updated last year
- Single cell epigenomic clustering based on accessibility pattern☆23Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆17Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆21Updated 9 months ago
- Inferring CNV data from single cell ATAC seq☆20Updated 7 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆21Updated 3 months ago