caleblareau / mtscATACpaper_reproducibilityLinks
Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020
☆16Updated 2 years ago
Alternatives and similar repositories for mtscATACpaper_reproducibility
Users that are interested in mtscATACpaper_reproducibility are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆46Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- ☆56Updated 2 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆10Updated 2 years ago
- ☆20Updated 3 weeks ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆20Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- ☆32Updated 7 months ago
- ☆22Updated 2 years ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆12Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆31Updated 7 months ago
- Inferring CNV data from single cell ATAC seq☆24Updated 2 months ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago