SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or WGS data with high accuracy.
☆10Jun 3, 2020Updated 6 years ago
Alternatives and similar repositories for soap-hla
Users that are interested in soap-hla are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- xHLA: Fast and accurate HLA typing from short read sequence data☆118Oct 13, 2023Updated 3 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 7 months ago
- ☆26Dec 4, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- ⛏ HLA predictions from NGS shotgun data☆58Sep 3, 2026Updated 2 months ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Oct 8, 2026Updated 3 weeks ago
- ☆34Aug 9, 2021Updated 5 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- An attempt to make HLA typing from OxfordNanopore reads (MinION platform)☆13Aug 20, 2018Updated 8 years ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31Sep 17, 2026Updated last month
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆57Dec 19, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- ☆16Jul 11, 2024Updated 2 years ago
- Fast HLA type inference from whole-genome data☆149Apr 3, 2025Updated last year
- An accurate and efficient HLA imputation method.☆27Mar 16, 2023Updated 3 years ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆115Aug 18, 2026Updated 2 months ago
- Portable database of microhaplotype marker and allele frequency data☆13Updated this week
- Precision HLA typing from next-generation sequencing data☆226May 20, 2026Updated 5 months ago
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆22Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Kourami: Graph-guided assembly for HLA alleles☆42May 21, 2019Updated 7 years ago
- GRIMM: Graph IMputation and Matching for HLA Genotypes☆11May 24, 2023Updated 3 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆23Nov 4, 2024Updated 2 years ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆24May 7, 2024Updated 2 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆268Updated this week
- tandemtwister: Tandem repeat genotyping tool☆23Feb 1, 2026Updated 9 months ago
- ☆12Aug 3, 2025Updated last year
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆12Oct 29, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆63Jul 27, 2026Updated 3 months ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 7 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Pleiotropy-informed conditional and conjunctional false discovery rate☆41Jun 3, 2025Updated last year
- Quality control pipeline for human exome/genome cohorts☆10Oct 23, 2026Updated 2 weeks ago
- Upload test☆23Jan 1, 2024Updated 2 years ago