HLA typing for Sanger Based Test
☆20Apr 7, 2023Updated 3 years ago
Alternatives and similar repositories for SOAPTyping
Users that are interested in SOAPTyping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Precision HLA typing from next-generation sequencing data☆79Apr 2, 2026Updated last week
- ⛏ HLA predictions from NGS shotgun data☆56Mar 27, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆253Mar 25, 2026Updated 2 weeks ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31May 24, 2025Updated 10 months ago
- ☆14Mar 22, 2018Updated 8 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆214Mar 3, 2026Updated last month
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- HIVID2 is a tool for detecting virus integration events in the host genome.☆12Oct 1, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Dec 19, 2023Updated 2 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆39Sep 28, 2022Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- ☆13Dec 7, 2021Updated 4 years ago
- HLA ARD Reduction in Python☆19Mar 20, 2026Updated 3 weeks ago
- ☆10Jul 13, 2022Updated 3 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆114Oct 13, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆38Feb 27, 2020Updated 6 years ago
- PCR Primer Quality Control☆71Sep 29, 2025Updated 6 months ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- ☆14Dec 13, 2023Updated 2 years ago
- ☆12Nov 7, 2025Updated 5 months ago
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆13Feb 2, 2026Updated 2 months ago
- ☆45Jun 27, 2023Updated 2 years ago
- Antigen-receptor Design Against Peptide-MHC Targets☆20Jan 9, 2026Updated 3 months ago
- scripts to automatically update ANNOVAR db☆19Nov 17, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆123Sep 5, 2023Updated 2 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Mar 17, 2026Updated 3 weeks ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 2 years ago
- ☆16Nov 2, 2020Updated 5 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago