cliu32 / Athlon
Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
☆15Updated 7 years ago
Alternatives and similar repositories for Athlon:
Users that are interested in Athlon are comparing it to the libraries listed below
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- A tutorial on structural variant calling for short read sequencing data☆29Updated 5 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Sample Contamination Estimate from VCF☆19Updated 4 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Master of Pores 2☆23Updated 3 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆30Updated 3 weeks ago
- ☆16Updated 2 months ago
- SV genotyping with long reads☆40Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- ☆24Updated 3 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆51Updated 5 years ago
- ☆29Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated last month
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆18Updated 3 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 11 months ago
- Computes various SV statistics☆14Updated last year
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago