Copy Number Methods for Detection and Genome Wide Association Tests
☆23Nov 4, 2024Updated last year
Alternatives and similar repositories for CNest
Users that are interested in CNest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jun 25, 2026Updated last week
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Jun 11, 2026Updated 3 weeks ago
- A nextflow pipeline for calling exome CNVs☆14Jun 22, 2026Updated last week
- ☆16Oct 10, 2023Updated 2 years ago
- ☆28Oct 7, 2025Updated 8 months ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Oct 8, 2024Updated last year
- An interactive learning resource for next-generation sequencing (NGS) techniques☆34Oct 12, 2018Updated 7 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆20Jun 13, 2025Updated last year
- Genotype Representation Graph Library☆47Updated this week
- A tool for estimating repeat sizes☆215Jan 30, 2024Updated 2 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆58Dec 19, 2023Updated 2 years ago
- Regional association plots☆25Apr 1, 2024Updated 2 years ago
- GWAS Summary Statistics Data Harmonisation☆29Jun 24, 2026Updated last week
- ☆54Jul 9, 2025Updated 11 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆56Mar 7, 2025Updated last year
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- NetICS: network-based integration of multi-omics data for prioritizing cancer genes☆16Jun 27, 2021Updated 5 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆83Oct 7, 2025Updated 8 months ago
- ☆22Jun 12, 2023Updated 3 years ago
- Partners Biobank genomics data QC☆30Mar 31, 2020Updated 6 years ago
- ☆18Feb 1, 2026Updated 5 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 3 months ago
- CN-Learn☆30Jan 24, 2020Updated 6 years ago
- Distributed and cloud computing framework for vg☆23Apr 21, 2026Updated 2 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆73Jun 26, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆52Sep 4, 2025Updated 10 months ago
- Bioinformatics with Unix, bash, Make, Python, and parallel☆22Aug 17, 2020Updated 5 years ago
- GENI plots to visualise results from genome-wide association studies☆32Oct 14, 2024Updated last year
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Genevieve genome report tool☆14Dec 8, 2022Updated 3 years ago
- AlfaPang builds pangenome graphs without alignments or references.☆16Nov 7, 2025Updated 7 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year