tf2 / CNest
Copy Number Methods for Detection and Genome Wide Association Tests
☆22Updated 6 months ago
Alternatives and similar repositories for CNest
Users that are interested in CNest are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- ☆14Updated last year
- ☆22Updated 4 months ago
- ☆21Updated last month
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated last month
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Liftover VCF files☆18Updated 8 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated last month
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- v2.x of the microassembly based somatic variant caller☆21Updated 2 weeks ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Updated 2 weeks ago
- (WIP) best-practices workflow for rare disease☆60Updated 10 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Allele-specific copy number estimation with whole genome sequencing☆23Updated last year
- Location of public benchmarking; primarily final results☆18Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 11 months ago