zhengxwen / HIBAG
R package – HLA Genotype Imputation with Attribute Bagging (development version only)
☆29Updated last week
Related projects: ⓘ
- Sample code for ldsc analyses in UKBB☆28Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- genetic correlation between phenotypes in the UK biobank☆13Updated 6 months ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Use gene expression to predict phenotype sample information☆19Updated 6 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 4 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Data management of large-scale whole-genome sequence variant calls (Development version only)☆43Updated last week
- A small R package to make sequencing read coverage plots in R.☆35Updated 2 years ago
- ☆15Updated 6 years ago
- mitochondrial variant analysis tools☆12Updated 3 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- Toolbox package for organizing and working with TCGA data☆23Updated 3 weeks ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆41Updated 8 months ago
- R package for plotting 3D graphical visualization of multi-omics data.☆21Updated 2 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆32Updated 6 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆9Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆12Updated 3 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Code and simulations using biologically annotated neural networks☆20Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆11Updated 7 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 3 months ago