R package – HLA Genotype Imputation with Attribute Bagging (development version only)
☆31Apr 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for HIBAG
Users that are interested in HIBAG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆55Dec 19, 2023Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated last month
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HLA-I ligand predictor☆45Mar 19, 2026Updated last month
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆38Jun 3, 2025Updated 11 months ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆73Oct 10, 2024Updated last year
- HLA ARD Reduction in Python☆19Apr 22, 2026Updated 2 weeks ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 7 months ago
- An accurate and efficient HLA imputation method.☆27Mar 16, 2023Updated 3 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- ⛏ HLA predictions from NGS shotgun data☆56Mar 27, 2026Updated last month
- A collection of various utilities for GWAS summary statistics☆33May 14, 2024Updated last year
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Computes various SV statistics☆14Oct 12, 2023Updated 2 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆115Oct 13, 2023Updated 2 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute☆16Jan 8, 2026Updated 4 months ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Class materials for a workshop at Karolinska Institute☆13Oct 5, 2023Updated 2 years ago
- Integrative analysis of structural variations.☆41Dec 20, 2023Updated 2 years ago
- A software for haplotype inference☆13May 13, 2025Updated 11 months ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- HLA-II ligand predictor.☆45Apr 6, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Upload test☆23Jan 1, 2024Updated 2 years ago
- A scikit-learn compatible estimator based on business-rules with interactive dashboard included☆28Aug 17, 2021Updated 4 years ago
- R/Shiny application for viewing microbial community data☆19Dec 17, 2020Updated 5 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Oct 19, 2025Updated 6 months ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- Unraveling the metabolic underpinnings of frailty using multicohort observational and Mendelian randomization analyses☆13May 17, 2023Updated 2 years ago
- Slides for the workshop Designing ggplots☆11Nov 21, 2021Updated 4 years ago