Fast HLA type inference from whole-genome data
☆146Apr 3, 2025Updated last year
Alternatives and similar repositories for HLA-LA
Users that are interested in HLA-LA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- xHLA: Fast and accurate HLA typing from short read sequence data☆116Oct 13, 2023Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆219May 20, 2026Updated last month
- ⛏ HLA predictions from NGS shotgun data☆56Jun 4, 2026Updated 3 weeks ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 2 months ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆58May 19, 2026Updated last month
- sort genomic data☆36Nov 7, 2025Updated 7 months ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆261Apr 17, 2026Updated 2 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆160Aug 20, 2024Updated last year
- ☆182Jun 15, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆26Dec 4, 2019Updated 6 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆215Jun 23, 2026Updated last week
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 2 months ago
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆205Updated this week
- MOsaic CHromosomal Alterations (MoChA) caller☆93Aug 22, 2025Updated 10 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆41May 21, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Copy number calling and variant classification using targeted short read sequencing☆148Feb 19, 2026Updated 4 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆105Dec 21, 2025Updated 6 months ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆185Apr 12, 2024Updated 2 years ago
- Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes☆71Apr 14, 2026Updated 2 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Structural variation and indel detection by local assembly☆256Jun 23, 2026Updated last week
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 2 weeks ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆79Feb 28, 2023Updated 3 years ago
- PGxPOP☆18Jan 25, 2023Updated 3 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆325Apr 24, 2026Updated 2 months ago
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 4 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 4 months ago