Fast HLA type inference from whole-genome data
☆143Apr 3, 2025Updated 11 months ago
Alternatives and similar repositories for HLA-LA
Users that are interested in HLA-LA are comparing it to the libraries listed below
Sorting:
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Oct 13, 2023Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆211Mar 3, 2026Updated 2 weeks ago
- ⛏ HLA predictions from NGS shotgun data☆55Jun 6, 2025Updated 9 months ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆38Jul 24, 2024Updated last year
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆56Updated this week
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆252Mar 6, 2026Updated 2 weeks ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆156Aug 20, 2024Updated last year
- ☆168Mar 12, 2026Updated last week
- ☆26Dec 4, 2019Updated 6 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆212Updated this week
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- MOsaic CHromosomal Alterations (MoChA) caller☆92Aug 22, 2025Updated 6 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Copy number calling and variant classification using targeted short read sequencing☆145Feb 19, 2026Updated last month
- Kourami: Graph-guided assembly for HLA alleles☆39May 21, 2019Updated 6 years ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆98Dec 21, 2025Updated 2 months ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆179Apr 12, 2024Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes☆69Jan 8, 2026Updated 2 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Structural variation and indel detection by local assembly☆253Mar 14, 2026Updated last week
- PGxPOP☆17Jan 25, 2023Updated 3 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆77Feb 28, 2023Updated 3 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆305Nov 14, 2025Updated 4 months ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Aug 22, 2023Updated 2 years ago