DiltheyLab / HLA-LALinks
Fast HLA type inference from whole-genome data
☆136Updated 4 months ago
Alternatives and similar repositories for HLA-LA
Users that are interested in HLA-LA are comparing it to the libraries listed below
Sorting:
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆134Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆167Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆98Updated 2 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆135Updated 2 years ago
- A suite of tools for detecting expansions of short tandem repeats☆82Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆87Updated last month
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 4 months ago
- WisecondorX — An evolved WISECONDOR☆101Updated last week
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- Software program for checking sample matching for NGS data☆134Updated last year
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆151Updated this week
- A tool for profiling long STRs from short reads☆99Updated 4 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆149Updated last year
- Gene fusion detection and visualization☆128Updated 3 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆158Updated this week
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆71Updated 11 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆138Updated this week
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- A structural variation pipeline for short-read sequencing☆193Updated this week
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated 3 weeks ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- a Medical Genetics Sequence Analysis Pipeline☆84Updated this week