DiltheyLab / HLA-LALinks
Fast HLA type inference from whole-genome data
☆141Updated 10 months ago
Alternatives and similar repositories for HLA-LA
Users that are interested in HLA-LA are comparing it to the libraries listed below
Sorting:
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆165Updated 2 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 3 years ago
- A Python package for pharmacogenomics (PGx) research☆82Updated last month
- A structural variation pipeline for short-read sequencing☆201Updated this week
- Long read production pipelines☆151Updated this week
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆161Updated last month
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆101Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆149Updated 2 weeks ago
- ABRA2☆95Updated 3 years ago
- A suite of tools for detecting expansions of short tandem repeats☆85Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆156Updated 2 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆173Updated 2 years ago
- Structural variation and indel detection by local assembly☆251Updated 4 months ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159Updated 6 months ago
- A small-RNA sequencing analysis pipeline☆98Updated last month
- GATK RNA-Seq Variant Calling in Nextflow☆138Updated 3 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆105Updated 2 months ago
- Copy number calling and variant classification using targeted short read sequencing☆141Updated 5 months ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated 2 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 3 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Updated last year