GfellerLab / MoDecLinks
Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
☆13Updated 5 months ago
Alternatives and similar repositories for MoDec
Users that are interested in MoDec are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆30Updated 2 years ago
- ☆12Updated 4 years ago
- ☆16Updated this week
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 5 months ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- Multi-Omics Peptide Generator☆22Updated this week
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 4 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated last month
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 2 years ago
- ☆18Updated last year
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆25Updated 10 months ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- ☆38Updated last year
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆32Updated 3 months ago
- ☆27Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year