GfellerLab / MoDecLinks
Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
☆15Updated 11 months ago
Alternatives and similar repositories for MoDec
Users that are interested in MoDec are comparing it to the libraries listed below
Sorting:
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- MHC Class I and Class II neoantigen binding prediction☆34Updated 6 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- Multi-Omics Peptide Generator☆30Updated 2 months ago
- flexible CDR based distance metrics☆69Updated last month
- ☆38Updated 2 years ago
- ☆18Updated 3 years ago
- ☆20Updated last year
- PRedictor of IMmunogenic Epitopes☆25Updated 4 months ago
- ☆41Updated 5 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Updated 2 months ago
- Scripts for building computational models of gene regulation with tensorflow☆11Updated 6 years ago
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- Kdrew's scripts for handling protein complex map data☆14Updated 7 months ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- HLA-I ligand predictor☆43Updated 4 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- ☆25Updated 4 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated 2 months ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- Connectivity Map analysis in MATLAB☆46Updated 4 years ago
- ☆16Updated 11 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 3 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago