GfellerLab / MoDec
Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
☆13Updated 2 months ago
Alternatives and similar repositories for MoDec
Users that are interested in MoDec are comparing it to the libraries listed below
Sorting:
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 3 months ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- ☆38Updated last year
- ☆18Updated last year
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- PRedictor of IMmunogenic Epitopes☆19Updated 11 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆35Updated this week
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- Summary statistics for repertoires☆17Updated 2 years ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Updated last year
- Absolute quantification package based on quantms.io☆14Updated 3 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- ☆11Updated 4 years ago
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- ☆39Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Updated last year
- flexible CDR based distance metrics☆62Updated 8 months ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- ☆17Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated last year
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago