DaehwanKimLab / hisat-genotypeLinks
☆30Updated 3 years ago
Alternatives and similar repositories for hisat-genotype
Users that are interested in hisat-genotype are comparing it to the libraries listed below
Sorting:
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- SeqMonk NGS visualisation and analysis tool☆49Updated last month
- R package for inferring copy number from read depth☆32Updated 2 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- QDNAseq package for Bioconductor☆50Updated last year
- ☆25Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- BigWig and BAM utilities☆97Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- BISulfite-seq CUI Toolkit☆24Updated 2 months ago
- Tools for analyzing DNA methylation data☆43Updated last week
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 4 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆50Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 3 weeks ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆80Updated this week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ☆38Updated 4 years ago
- ☆70Updated 2 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆50Updated 4 months ago