DaehwanKimLab / hisat-genotypeLinks
☆30Updated 4 years ago
Alternatives and similar repositories for hisat-genotype
Users that are interested in hisat-genotype are comparing it to the libraries listed below
Sorting:
- ⛏ HLA predictions from NGS shotgun data☆55Updated 5 months ago
- QDNAseq package for Bioconductor☆53Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Tumor Mutational Burden☆63Updated 4 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- Precision HLA typing from next-generation sequencing data☆74Updated last week
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- ☆38Updated 4 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆21Updated this week
- BigWig and BAM utilities☆99Updated last year
- ☆25Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Genomic Association Tester☆34Updated 2 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 8 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆27Updated last year
- QDNAseq.hg38: QDNAseq bin annotation for hg38☆16Updated last month
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Somatic point mutation caller☆32Updated 6 months ago
- Tools for analyzing DNA methylation data☆44Updated this week
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated 2 years ago