Alternatives and similar repositories for pleiofdr

Users that are interested in pleiofdr are comparing it to the libraries listed below

• alexploner / cfdr.pleio
  cfdr.pleio is an R package implementing conditional and conjunctional false discovery rates for studying pleiotropic gene variants betwee…
  ☆18Updated 2 years ago
• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆18Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆38Updated 3 months ago
• cuelee / pleio
  ☆19Updated 5 months ago
• qlu-lab / SUPERGNOVA
  ☆30Updated 4 years ago
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆23Updated 4 months ago
• precimed / gsa-mixer
  ☆20Updated 3 months ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆58Updated 4 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated this week
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆16Updated 11 months ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆38Updated last year
• BIG-S2 / GWAS
  GWAS Summary Statistics for Brain Imaging Phenotypes
  ☆20Updated 4 years ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆41Updated 4 years ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆55Updated last year
• zhilizheng / SBayesRC
  ☆46Updated 6 months ago
• gamazonlab / MR-JTI
  ☆57Updated 11 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 4 years ago
• yuanzhongshang / PMR
  ☆27Updated 5 years ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆38Updated 11 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• josefin-werme / LAVA
  ☆78Updated 2 months ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆57Updated 3 weeks ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆35Updated 5 months ago