nmdp-bioinformatics / ImmunogeneticDataTools
Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium
☆11Updated last year
Alternatives and similar repositories for ImmunogeneticDataTools:
Users that are interested in ImmunogeneticDataTools are comparing it to the libraries listed below
- Kourami: Graph-guided assembly for HLA alleles☆38Updated 5 years ago
- ☆16Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Multi-sample somatic variant caller☆50Updated 3 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Updated 2 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- ☆20Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆46Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆39Updated 7 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆68Updated 2 years ago
- Collection of notes and scripts related to NGS☆14Updated 3 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago