HLA-TAPAS pipeline for HLA association and fine-mapping studies
☆54Dec 19, 2023Updated 2 years ago
Alternatives and similar repositories for HLA-TAPAS
Users that are interested in HLA-TAPAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆72Oct 10, 2024Updated last year
- An accurate and efficient HLA imputation method.☆27Mar 16, 2023Updated 3 years ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31May 24, 2025Updated 9 months ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆38Jul 24, 2024Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Upload test☆23Jan 1, 2024Updated 2 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 9 months ago
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 11 months ago
- ☆11Jun 26, 2020Updated 5 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Jan 10, 2024Updated 2 years ago
- Regional association plots☆24Apr 1, 2024Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 2 years ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago
- HLA ARD Reduction in Python☆19Mar 13, 2026Updated last week
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 2 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Nov 4, 2024Updated last year
- ☆11Feb 14, 2023Updated 3 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Feb 1, 2019Updated 7 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Multi-Trait Genome-Wide Association Analysis☆19Dec 19, 2023Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆213Mar 3, 2026Updated 2 weeks ago
- Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute☆16Jan 8, 2026Updated 2 months ago
- HLA-I ligand predictor☆44Sep 24, 2025Updated 5 months ago
- Python module to read binary Plink files.☆17Jun 18, 2024Updated last year
- Fast HLA type inference from whole-genome data☆143Apr 3, 2025Updated 11 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- ☆10Jul 2, 2024Updated last year
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆56Updated this week
- ⛏ HLA predictions from NGS shotgun data☆55Jun 6, 2025Updated 9 months ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago